NC_029469.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_029469.1 Foeniculum vulgare chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  153628

    Tables:   1   

    This is table  1  of  1  ( 27 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  6477--6504                         14       2.0      14          100       0         56      35   21   0    42   1.53

  6875--6900                         12       2.2      12          100       0         52      50   7    0    42   1.31

  14288--14319                       12       2.8      12          95        4         57      31   9    18   40   1.83

  15998--16040                       20       2.2      20          82        0         50      44   11   18   25   1.84

  21200--21296                       49       2.0      49          87        0         140     30   17   19   31   1.95

  28213--28241                       14       2.1      14          100       0         58      34   0    6    58   1.25

  31989--32040                       13       4.2      13          80        14        56      53   0    1    44   1.11

  47513--47571                       11       4.8      13          87        8         72      38   8    1    50   1.43

  47520--47558                       11       3.5      11          100       0         78      38   7    0    53   1.30

  47995--48031                       10       4.0      10          80        20        53      51   8    8    32   1.61

  47997--48032                       17       2.1      17          100       0         72      52   5    5    36   1.48

  48185--48227                       20       2.2      20          84        8         54      37   4    0    58   1.19

  68812--68861                       24       2.1      24          92        0         82      48   8    4    40   1.51

  68952--68992                       21       2.0      21          90        0         64      26   26   12   34   1.92

  75197--75233                       19       1.9      19          100       0         74      54   16   8    21   1.68

  78806--78834                       7        4.3      7           91        8         51      27   13   0    58   1.36

  78807--78832                       13       2.0      13          100       0         52      23   15   0    61   1.33

  89339--89427                       21       4.2      21          84        5         117     12   22   8    56   1.64

  90535--90578                       15       2.9      15          93        0         70      27   34   13   25   1.93

  91783--91920                       18       7.7      18          98        0         258     28   5    31   34   1.81

  107883--107948                     32       2.1      32          97        0         123     40   24   9    25   1.84

  111408--111454                     19       2.6      19          90        6         71      51   10   6    31   1.62

  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  114538--114577                     16       2.5      16          100       0         80      37   5    0    57   1.21

  132339--132404                     32       2.1      32          97        0         123     25   9    24   40   1.84

  148368--148505                     18       7.7      18          98        0         258     34   31   5    28   1.81

  149710--149753                     15       2.9      15          93        0         70      25   13   34   27   1.93

  150861--150949                     21       4.2      21          84        5         117     56   8    22   12   1.64
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!