NC_029470.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029470.1 Anethum graveolens chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153356
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6320--6347 14 2.0 14 100 0 56 35 21 0 42 1.53
6719--6747 12 2.4 12 100 0 58 51 6 0 41 1.28
14070--14101 12 2.8 12 95 4 57 31 9 18 40 1.83
15792--15834 20 2.2 20 82 0 50 44 11 18 25 1.84
28001--28029 14 2.1 14 100 0 58 34 0 6 58 1.25
46262--46302 20 2.0 20 100 0 82 26 19 14 39 1.90
47299--47346 13 3.8 13 83 10 64 39 8 2 50 1.44
47306--47333 11 2.5 11 100 0 56 39 7 0 53 1.28
47299--47346 24 2.0 24 91 0 78 39 8 2 50 1.44
47323--47405 42 2.0 42 100 0 166 53 4 7 34 1.50
47812--47848 10 4.0 10 80 20 53 51 8 8 32 1.61
47814--47849 17 2.1 17 100 0 72 52 5 5 36 1.48
48008--48050 20 2.2 20 84 8 54 37 4 0 58 1.19
49473--49504 16 2.0 16 100 0 64 12 25 12 50 1.75
68652--68701 24 2.1 24 92 0 82 48 8 4 40 1.51
68792--68832 21 2.0 21 90 0 64 26 26 12 34 1.92
71005--71050 19 2.4 20 82 10 60 73 0 17 8 1.07
75046--75082 19 1.9 19 100 0 74 54 16 8 21 1.68
78653--78688 15 2.6 14 91 8 56 25 13 0 61 1.33
89184--89251 21 3.2 21 77 8 75 11 22 8 57 1.61
90359--90402 15 2.9 15 93 0 70 27 34 13 25 1.93
91619--91684 18 3.7 18 97 0 123 28 4 31 34 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
107645--107710 32 2.1 32 94 0 114 40 22 9 27 1.84
111173--111222 19 2.8 17 85 11 73 52 10 6 32 1.59
132154--132219 32 2.1 32 94 0 114 27 9 22 40 1.84
148179--148244 18 3.7 18 97 0 123 34 31 4 28 1.78
149461--149504 15 2.9 15 93 0 70 25 13 34 27 1.93
150630--150683 21 2.6 21 82 11 74 59 11 20 9 1.59
150613--150682 21 3.4 19 72 16 59 57 8 22 11 1.61
151521--151558 18 2.1 19 85 5 51 36 7 15 39 1.77
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Tables: 1
The End!