NC_029828.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029828.1 Astragalus mongholicus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 123582
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4425--4450 13 2.0 13 100 0 52 61 7 0 30 1.24
4431--4468 20 1.9 19 85 15 51 65 2 0 31 1.06
4452--4512 19 2.9 19 73 17 59 54 0 1 44 1.10
4452--4512 22 2.8 21 75 20 63 54 0 1 44 1.10
14936--14960 12 2.1 12 100 0 50 60 0 8 32 1.26
18730--18806 15 5.3 15 80 9 70 54 0 0 45 0.99
19295--19337 21 2.0 21 95 0 77 41 9 30 18 1.82
24909--24938 15 2.1 14 93 6 51 56 0 6 36 1.26
29193--29219 13 2.1 13 100 0 54 62 0 7 29 1.22
29197--29249 16 3.1 17 82 15 56 58 0 5 35 1.22
29663--29703 14 3.0 14 76 16 50 58 2 2 36 1.24
47826--47869 14 3.3 13 82 14 54 75 4 0 20 0.98
53518--53599 11 7.7 11 73 20 52 37 1 2 58 1.19
53553--53599 5 9.4 5 78 17 53 40 0 2 57 1.11
53555--53599 9 5.3 9 82 12 60 40 0 2 57 1.11
54234--54272 11 3.5 11 89 0 51 28 0 0 71 0.86
56839--56886 17 2.8 18 81 15 57 47 0 2 50 1.12
64025--64069 15 3.1 15 83 3 65 60 4 6 28 1.42
65339--65419 2 44.0 2 72 20 70 41 1 1 55 1.15
65333--65418 9 9.2 9 82 7 100 40 1 1 56 1.14
65333--65407 18 4.1 18 94 5 125 40 0 0 60 0.97
65333--65407 14 5.5 14 83 15 86 40 0 0 60 0.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
65513--65551 21 1.9 21 89 5 62 33 20 7 38 1.81
83240--83271 10 3.3 10 95 4 57 53 0 0 46 1.00
83280--83334 10 5.8 10 74 20 55 45 0 0 54 0.99
83240--83349 49 2.2 49 80 6 125 50 0 1 48 1.11
83431--83470 16 2.4 16 87 8 53 57 2 0 40 1.12
83461--83521 19 3.2 19 63 9 52 47 3 9 39 1.53
89588--89613 13 2.0 13 100 0 52 15 15 30 38 1.88
97497--97531 11 3.2 11 87 0 52 42 8 25 22 1.82
104170--104457 15 19.1 15 70 19 190 56 13 0 29 1.37
104098--104532 51 8.6 51 75 17 329 55 12 0 32 1.37
104170--104459 70 4.3 68 95 4 420 56 13 0 30 1.37
104295--104457 22 7.0 23 65 18 79 58 14 0 27 1.37
104290--104399 27 4.0 27 70 16 93 60 14 0 25 1.35
104208--104457 70 3.6 70 94 5 424 56 13 0 30 1.37
104481--104505 12 2.1 12 100 0 50 68 16 0 16 1.22
120304--120335 16 2.0 16 100 0 64 50 0 0 50 1.00
120356--120389 18 1.9 18 94 5 61 38 8 0 52 1.33
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Tables: 1
The End!