NC_029960.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029960.1 Lodoicea maldivica plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159010
Tables: 1
This is table 1 of 1 ( 78 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5568--5607 20 2.0 21 90 5 64 10 7 5 77 1.11
6793--6817 12 2.1 12 100 0 50 28 16 24 32 1.96
8440--8491 12 3.8 13 85 12 61 19 5 0 75 1.01
8439--8491 26 2.0 27 85 10 74 18 7 0 73 1.06
8470--8507 19 2.0 20 94 5 69 23 5 0 71 1.07
8515--8549 17 2.1 17 100 0 70 65 0 17 17 1.27
8912--8966 2 27.5 2 100 0 110 50 0 0 49 1.00
10203--10247 22 2.0 22 95 0 81 24 13 4 57 1.54
12834--12883 17 2.6 21 72 24 63 12 8 10 70 1.35
12839--12882 17 2.6 17 100 0 88 11 6 9 72 1.27
13974--14031 29 2.0 30 93 3 100 62 1 17 18 1.42
17105--17133 15 1.9 15 100 0 58 27 13 20 37 1.91
28220--28262 17 2.6 17 74 3 52 48 0 16 34 1.46
30085--30131 18 2.6 18 83 16 69 48 4 0 46 1.21
30340--30377 14 2.7 14 100 0 76 44 0 7 47 1.32
33044--33075 15 2.1 15 100 0 64 43 6 12 37 1.68
36359--36401 21 2.0 21 95 0 77 37 16 9 37 1.81
37982--38007 13 2.0 13 100 0 52 38 7 0 53 1.30
43083--43135 26 2.0 26 100 0 106 35 22 7 33 1.83
46041--46071 16 1.9 16 93 0 53 32 22 6 38 1.80
47402--47432 14 2.2 14 94 0 53 35 9 0 54 1.33
47486--47515 15 2.0 15 100 0 60 33 6 6 53 1.53
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
47518--47549 15 2.1 15 100 0 64 40 6 12 40 1.68
47587--47614 14 2.0 14 100 0 56 35 14 0 50 1.43
48811--48835 12 2.1 12 100 0 50 16 36 0 48 1.46
51995--52024 14 2.1 14 100 0 60 56 0 6 36 1.26
52181--52218 17 2.4 16 91 8 60 76 2 5 15 1.08
52181--52218 16 2.4 17 86 8 53 76 2 5 15 1.08
52173--52219 17 2.8 16 81 9 58 78 2 4 14 0.99
52172--52225 27 2.0 27 85 7 74 75 1 5 16 1.07
52176--52256 35 2.3 35 81 12 87 72 1 4 20 1.10
52209--52248 22 1.9 22 85 10 57 67 0 5 27 1.11
53341--53369 13 2.1 14 93 6 51 13 0 6 79 0.93
58932--58963 16 2.0 16 100 0 64 37 25 0 37 1.56
61245--61275 16 1.9 16 93 0 53 77 0 6 16 0.97
61545--61572 11 2.5 11 100 0 56 35 17 0 46 1.49
61628--61667 19 2.1 19 95 0 71 55 0 0 45 0.99
61667--61723 15 3.5 17 74 25 61 54 0 0 45 0.99
67260--67295 14 2.6 14 100 0 72 61 5 0 33 1.19
69694--69757 17 3.7 17 82 12 60 32 9 0 57 1.30
70211--70263 14 3.8 13 90 5 61 49 9 1 39 1.46
70223--70275 14 3.8 14 87 9 65 52 9 0 37 1.34
70322--70356 16 2.2 16 89 0 52 40 0 14 45 1.45
78841--78886 20 2.3 20 96 3 85 32 13 15 39 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
81860--81908 24 2.0 24 96 0 89 28 30 12 28 1.93
84249--84379 3 44.0 3 70 18 69 62 0 2 35 1.08
84251--84402 14 11.9 13 71 20 67 61 0 3 35 1.13
84272--84335 33 1.9 34 87 3 94 70 0 0 29 0.88
84272--84395 58 2.2 57 82 13 152 63 0 3 33 1.10
84270--84379 19 6.0 18 70 17 75 65 0 2 31 1.07
84286--84387 33 3.1 33 75 19 104 65 0 3 30 1.10
84363--84402 12 2.9 14 85 14 57 57 0 7 35 1.27
84410--84438 14 2.1 14 100 0 58 31 0 6 62 1.22
85414--85453 20 2.0 20 100 0 80 40 25 5 30 1.77
89611--89641 15 2.1 15 100 0 62 19 32 0 48 1.49
91883--91965 21 3.8 21 91 4 121 14 27 10 46 1.78
91904--91972 21 3.3 21 95 0 120 13 31 8 46 1.73
94322--94388 24 3.6 18 74 25 59 32 5 23 37 1.79
94329--94381 24 2.2 24 100 0 106 33 7 24 33 1.84
102684--102769 6 14.2 6 92 6 129 32 2 12 52 1.52
116143--116193 9 5.6 10 82 17 67 72 0 0 27 0.85
116151--116193 18 2.3 19 96 4 79 69 0 0 30 0.88
116143--116194 27 1.9 27 88 7 79 71 0 0 28 0.87
120834--120861 13 2.2 13 100 0 56 53 7 7 32 1.55
120910--120944 9 3.9 9 96 0 61 37 0 0 62 0.95
120885--120919 16 2.2 16 100 0 70 42 11 0 45 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
120896--120990 41 2.3 41 85 3 120 47 5 0 47 1.24
121038--121064 12 2.2 12 100 0 54 48 0 7 44 1.31
121022--121081 31 1.9 32 86 10 88 46 0 8 45 1.33
127444--127480 18 2.1 18 100 0 74 51 5 10 32 1.60
130180--130205 12 2.2 12 100 0 52 15 7 0 76 0.99
142803--142888 6 14.2 6 92 6 129 52 12 2 32 1.52
151191--151243 24 2.2 24 100 0 106 33 24 7 33 1.84
151184--151247 18 3.2 19 73 26 53 35 25 6 32 1.81
153600--153668 21 3.3 21 95 0 120 46 8 31 13 1.73
153607--153689 21 3.8 21 91 4 121 46 10 27 14 1.78
155931--155961 15 2.1 15 100 0 62 48 0 32 19 1.49
158959--158995 17 2.2 17 90 0 56 81 2 2 13 0.92
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Tables: 1
The End!