NC_030065.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030065.1 Gloriosa superba chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157924
Tables: 1
This is table 1 of 1 ( 66 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
24--49 12 2.2 12 100 0 52 19 0 23 57 1.40
8486--8510 12 2.1 12 100 0 50 52 0 16 32 1.44
8482--8523 19 2.2 20 82 4 50 57 0 11 30 1.35
8535--8566 17 1.9 17 93 6 57 65 3 0 31 1.08
8512--8572 24 2.6 23 82 10 70 68 1 3 26 1.14
9803--9968 55 3.0 55 100 0 332 31 19 3 45 1.68
16623--16652 10 3.0 10 95 0 51 30 26 20 23 1.98
27934--27979 22 2.0 23 95 4 85 50 2 17 30 1.58
28201--28241 20 2.0 20 90 4 64 31 0 2 65 1.05
28363--28487 8 15.5 8 70 20 82 55 6 0 37 1.31
28363--28487 3 43.3 3 69 19 61 55 6 0 37 1.31
28369--28482 11 10.5 11 69 23 57 54 7 0 37 1.34
28358--28486 14 9.2 14 70 18 65 54 7 0 37 1.35
28363--28487 17 7.6 17 75 15 79 55 6 0 37 1.31
28363--28487 49 2.6 49 77 15 129 55 6 0 37 1.31
28796--28837 11 3.8 11 84 15 52 42 14 0 42 1.45
31924--31956 12 2.7 13 90 9 52 42 0 12 45 1.41
34982--35026 6 7.7 6 80 14 58 66 2 0 31 1.04
34985--35040 13 3.9 13 80 17 58 64 5 0 30 1.16
34985--35029 16 3.0 16 90 9 69 68 4 0 26 1.08
44556--44601 17 2.6 17 93 6 74 28 0 10 60 1.30
45556--45581 13 2.0 13 100 0 52 38 15 0 46 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
45568--45611 22 2.0 22 95 4 81 45 9 4 40 1.56
45663--45691 14 2.1 14 100 0 58 27 0 13 58 1.36
46223--46264 21 2.0 21 100 0 84 42 9 0 47 1.36
46289--46317 14 2.1 14 100 0 58 41 0 6 51 1.28
50441--50484 20 2.3 19 84 7 54 45 13 11 29 1.79
50455--50492 11 3.6 11 86 13 62 47 7 10 34 1.67
50452--50491 20 2.0 20 100 0 80 45 10 10 35 1.71
50524--50577 15 3.4 15 76 18 56 48 7 12 31 1.69
50524--50571 18 2.8 17 82 14 55 47 6 12 33 1.66
50699--50751 15 3.3 16 78 7 54 43 1 3 50 1.30
54779--54808 14 2.1 14 93 0 51 26 10 10 53 1.66
56783--56860 13 6.2 13 82 12 83 65 5 0 29 1.14
56830--56889 16 3.9 16 81 14 63 68 0 3 28 1.05
56833--56879 18 2.6 19 80 10 53 70 0 2 27 0.99
56835--56898 13 4.8 13 81 14 60 65 0 4 29 1.13
56835--56898 29 2.4 28 84 10 80 65 0 4 29 1.13
58130--58229 45 2.2 45 89 0 155 43 8 26 23 1.81
61602--61640 17 2.3 17 90 0 60 20 2 0 76 0.90
64227--64273 15 3.1 15 96 0 85 25 12 48 12 1.77
69105--69202 49 2.0 49 100 0 196 34 10 12 42 1.76
71146--71177 14 2.3 14 100 0 64 6 6 0 87 0.67
81368--81397 15 2.0 15 100 0 60 46 6 0 46 1.29
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
81384--81425 22 2.0 20 90 9 66 40 4 4 50 1.45
83308--83337 13 2.3 13 100 0 60 36 0 23 40 1.55
89994--90059 21 3.1 21 93 0 114 13 31 9 45 1.75
92403--92450 24 2.0 24 95 0 87 33 10 22 33 1.88
100219--100270 24 2.3 23 83 12 63 11 3 5 78 1.05
100782--100832 16 3.1 17 75 13 61 31 1 7 58 1.37
113072--113100 13 2.3 13 94 5 51 72 6 6 13 1.26
115884--115915 16 2.0 16 93 0 55 46 0 9 43 1.35
116290--116319 14 2.1 14 93 0 51 46 3 20 30 1.66
120561--120611 10 5.6 10 84 15 67 76 0 0 23 0.79
120558--120611 18 3.1 18 82 17 69 75 0 0 24 0.80
120560--120621 26 2.4 26 94 0 106 74 1 0 24 0.91
120558--120610 16 3.1 16 83 10 61 75 0 0 24 0.80
120560--120623 5 12.4 5 74 12 58 75 1 0 23 0.90
121829--121885 29 2.0 28 100 0 105 49 10 10 28 1.70
122188--122230 11 3.6 11 82 14 50 37 4 0 58 1.19
122189--122227 13 3.2 13 86 13 57 38 5 0 56 1.22
129017--129050 12 2.8 12 90 0 50 50 0 0 50 1.00
142105--142155 16 3.1 17 75 13 61 58 7 1 31 1.37
142667--142718 24 2.2 24 80 16 65 78 5 3 11 1.05
150487--150534 24 2.0 24 95 0 87 33 22 10 33 1.88
152878--152943 21 3.1 21 93 0 114 45 9 31 13 1.75
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Tables: 1
The End!