NC_030487.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030487.1 Imperata cylindrica voucher DEK:Burke 21 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 140831
Tables: 1
This is table 1 of 1 ( 39 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6123--6168 16 2.9 16 93 3 76 56 13 4 26 1.55
6989--7015 13 2.1 13 100 0 54 51 22 0 25 1.48
14145--14169 12 2.1 12 100 0 50 36 16 16 32 1.90
16184--16231 13 3.8 13 80 5 62 47 8 4 39 1.53
16184--16231 25 1.9 25 95 0 87 47 8 4 39 1.53
16289--16420 67 2.0 67 89 0 201 31 16 24 28 1.96
19196--19227 16 2.0 16 100 0 64 18 12 6 62 1.50
20485--20530 23 2.0 23 100 0 92 34 13 8 43 1.74
27080--27120 21 2.0 21 100 0 82 26 29 14 29 1.95
27972--28000 15 1.9 15 100 0 58 27 34 17 20 1.95
29045--29260 21 10.0 21 72 9 139 40 14 30 14 1.86
29046--29145 42 2.4 42 94 0 182 39 16 33 12 1.85
29337--29414 33 2.4 32 80 8 95 39 11 32 16 1.85
29407--29437 12 2.6 12 94 0 53 45 19 25 9 1.81
31782--31807 11 2.4 11 100 0 52 26 0 15 57 1.38
35149--35176 14 2.0 14 100 0 56 57 7 7 28 1.52
45574--45625 26 2.0 26 100 0 104 15 38 7 38 1.76
50171--50217 21 2.2 21 96 0 85 40 8 21 29 1.83
52941--52981 15 2.7 15 100 0 82 41 0 12 46 1.41
54088--54159 25 3.2 22 86 9 92 59 20 2 16 1.49
56873--56903 15 2.1 15 100 0 62 19 32 6 41 1.77
59324--59363 19 2.0 20 95 4 73 35 10 0 55 1.34
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67879--68003 21 6.0 21 83 3 171 37 25 5 31 1.79
67879--68000 63 1.9 63 90 3 192 37 26 4 31 1.77
68291--68349 21 2.8 21 75 10 66 49 22 10 18 1.77
70636--70682 17 2.7 17 86 3 58 46 8 8 36 1.65
70653--70686 17 2.0 17 100 0 68 52 5 11 29 1.61
78701--78740 18 2.2 18 86 0 53 2 20 7 70 1.24
78713--78753 18 2.3 18 86 0 55 9 14 2 73 1.19
94272--94304 14 2.4 14 94 0 57 27 15 3 54 1.55
94297--94358 20 3.0 21 95 2 108 37 4 8 50 1.54
94298--94361 21 3.1 21 95 2 112 35 4 7 51 1.52
105383--105419 18 2.1 18 100 0 74 21 5 10 62 1.48
108418--108455 10 3.7 10 86 6 58 26 15 10 47 1.78
108413--108454 21 2.0 21 100 0 84 28 14 9 47 1.75
118149--118185 18 2.1 18 100 0 74 62 10 5 21 1.48
129207--129270 21 3.1 21 93 4 112 51 7 4 35 1.52
129211--129271 20 3.0 20 95 2 104 50 6 4 37 1.50
129264--129296 14 2.4 14 94 0 57 54 3 15 27 1.55
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Tables: 1
The End!