NC_030761.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030761.1 Aconitum carmichaelii voucher ACAR20151205 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155737
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4920--4946 13 2.1 13 100 0 54 37 7 7 48 1.59
5177--5214 19 2.0 19 94 0 67 42 2 10 44 1.52
5183--5217 15 2.5 13 86 13 52 42 2 11 42 1.55
8183--8220 19 2.0 19 100 0 76 57 10 15 15 1.64
13280--13317 20 1.9 20 100 0 76 31 5 28 34 1.80
23120--23159 20 2.0 20 100 0 80 40 15 20 25 1.90
27090--27131 21 2.0 21 90 0 66 28 9 28 33 1.88
48858--48905 23 2.1 23 96 0 87 58 4 8 29 1.46
67565--67600 17 2.1 17 94 0 63 30 16 2 50 1.60
69438--69489 23 2.3 22 84 12 70 65 1 0 32 1.04
69432--69475 19 2.4 19 92 3 72 63 2 0 34 1.07
70143--70177 18 1.9 18 94 0 61 11 34 5 48 1.63
73043--73068 13 2.0 13 100 0 52 38 0 7 53 1.30
81244--81291 24 2.0 24 91 0 78 25 33 16 25 1.96
82540--82580 17 2.4 17 83 0 55 29 17 9 43 1.80
85492--85533 21 2.0 21 85 0 57 23 26 9 40 1.85
90638--90706 21 3.2 22 78 12 72 11 23 10 55 1.66
93050--93119 9 8.1 9 70 9 56 32 5 24 37 1.79
93057--93119 18 3.7 18 85 6 78 33 6 25 34 1.81
93045--93116 24 3.3 23 70 23 66 31 6 23 37 1.82
94375--94414 15 2.7 15 96 0 71 40 10 32 17 1.83
100914--100963 21 2.5 21 84 9 61 14 10 2 74 1.16
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
100935--100986 27 1.9 27 84 7 70 15 11 0 73 1.11
112524--112566 21 1.9 21 81 13 50 67 2 2 27 1.15
125112--125143 16 2.0 16 100 0 64 62 18 0 18 1.33
127510--127563 24 2.3 24 71 9 58 20 9 11 59 1.59
128745--128769 12 2.1 12 100 0 50 48 24 0 28 1.52
141082--141133 27 1.9 27 84 7 70 73 0 11 15 1.11
147654--147693 15 2.7 15 96 0 71 17 32 10 40 1.83
148949--148995 18 2.6 18 93 0 76 34 27 4 34 1.77
148949--149018 9 8.1 9 71 9 56 37 24 5 32 1.79
151363--151430 21 3.2 21 81 10 77 54 10 23 11 1.67
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Tables: 1
The End!