NC_030772.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030772.1 Taraxacum officinale chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151324
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4185--4223 19 2.1 19 100 0 78 41 17 15 25 1.89
6756--6780 12 2.1 12 100 0 50 76 0 8 16 1.02
6947--6973 13 2.1 13 100 0 54 48 29 0 22 1.51
9390--9435 22 2.1 22 95 0 83 30 8 21 39 1.84
11660--11697 19 2.0 19 94 0 67 28 28 31 10 1.90
12126--12182 28 2.0 28 100 0 114 36 17 14 31 1.89
12266--12304 19 2.0 20 95 5 71 38 10 15 35 1.81
24882--24906 12 2.1 12 100 0 50 60 8 8 24 1.52
29705--29758 24 2.3 24 96 3 101 37 3 14 44 1.63
29760--29787 14 2.0 14 100 0 56 57 0 7 35 1.26
29759--29812 22 2.5 20 78 21 56 61 0 7 31 1.24
30933--30961 14 2.1 14 100 0 58 72 0 6 20 1.07
30994--31027 17 2.0 17 94 0 59 29 0 20 50 1.49
31546--31580 18 1.9 18 88 0 52 28 0 11 60 1.32
34950--34975 13 2.0 13 100 0 52 61 0 7 30 1.24
51727--51778 27 2.0 26 84 3 68 30 21 11 36 1.89
52112--52142 16 1.9 16 100 0 62 64 0 0 35 0.94
54525--54556 16 2.0 16 93 0 55 43 28 0 28 1.55
56242--56291 25 2.0 25 96 0 91 28 10 26 36 1.88
57067--57120 27 2.0 27 100 0 108 37 3 29 29 1.75
58701--58733 17 1.9 17 93 0 57 54 6 12 27 1.60
58942--58989 20 2.3 21 92 7 89 45 4 4 45 1.41
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
64651--64690 21 1.9 21 94 0 71 50 0 7 42 1.30
66312--66343 16 2.0 16 100 0 64 31 12 25 31 1.92
67721--67761 21 2.0 21 95 0 73 31 24 9 34 1.88
78633--78660 14 2.0 14 100 0 56 0 21 14 64 1.29
91166--91208 18 2.4 18 96 0 77 30 13 23 32 1.93
98548--98610 29 2.1 30 85 8 85 25 11 4 58 1.51
106335--106396 32 1.9 32 93 0 106 41 22 8 27 1.82
107706--107753 24 2.0 24 100 0 96 29 20 12 37 1.90
117319--117371 25 2.1 25 100 0 106 37 7 3 50 1.49
127467--127514 24 2.0 24 100 0 96 37 12 20 29 1.90
128824--128885 32 1.9 32 93 0 106 27 8 22 41 1.82
136610--136672 29 2.1 30 85 8 85 58 4 11 25 1.51
144012--144054 18 2.4 18 96 0 77 32 23 13 30 1.93
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Tables: 1
The End!