NC_030783.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030783.1 Carthamus tinctorius chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153114
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
108--141 17 2.0 17 100 0 68 29 11 5 52 1.61
101--150 27 1.9 25 88 8 73 30 12 4 54 1.55
4917--4943 13 2.1 13 100 0 54 55 7 14 22 1.64
6536--6572 9 4.1 9 85 0 56 64 13 8 13 1.48
8930--8962 16 2.1 16 100 0 66 51 0 24 24 1.48
10251--10301 25 2.0 25 100 0 102 41 7 19 31 1.80
11642--11691 26 1.9 26 91 0 82 32 16 14 38 1.88
11871--11941 20 3.5 20 98 0 133 46 18 19 15 1.84
25016--25040 12 2.1 12 100 0 50 60 8 8 24 1.52
25420--25466 24 2.0 24 83 8 60 46 0 36 17 1.48
29748--29802 27 2.0 27 92 0 92 54 5 3 36 1.41
34785--34812 14 2.0 14 100 0 56 64 21 7 7 1.43
47599--47860 87 3.0 87 96 0 470 25 18 24 30 1.98
48023--48061 12 3.3 12 92 3 62 12 15 0 71 1.14
52054--52083 15 2.0 15 93 0 51 36 16 13 33 1.88
54817--54864 16 3.0 16 96 0 87 43 22 2 31 1.65
56561--56635 25 3.0 25 100 0 150 24 8 32 36 1.84
59183--59230 20 2.3 21 89 7 80 45 6 4 43 1.48
63177--63220 21 2.1 21 95 0 79 56 6 9 27 1.55
65786--65810 12 2.1 12 100 0 50 40 8 16 36 1.77
68059--68099 21 2.0 21 95 0 73 31 24 9 34 1.88
91374--91469 18 5.4 17 88 5 95 27 9 27 36 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
91374--91469 36 2.7 36 83 0 120 27 9 27 36 1.87
107255--107316 32 1.9 32 93 0 106 41 22 8 27 1.82
109344--109386 21 2.0 21 100 0 86 67 0 9 23 1.19
113207--113234 14 2.0 14 100 0 56 21 21 0 57 1.41
118556--118588 16 2.1 16 100 0 66 42 6 18 33 1.75
124134--124199 30 2.2 30 83 5 80 36 25 4 33 1.77
124152--124223 30 2.4 30 83 4 83 26 29 5 38 1.79
124206--124252 24 2.0 24 100 0 94 10 42 0 46 1.38
124228--124266 18 2.2 18 100 0 78 12 38 0 48 1.42
124439--124480 21 2.0 21 85 0 57 45 33 2 19 1.63
129965--130026 32 1.9 32 93 0 106 27 8 22 41 1.82
145812--145907 18 5.3 18 88 0 120 36 27 9 27 1.87
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!