NC_030789.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030789.1 Diospyros kaki chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157784
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5032--5065 17 2.0 17 94 0 59 23 14 11 50 1.76
6523--6554 14 2.1 16 88 11 50 21 6 0 71 1.07
10924--10948 12 2.1 12 100 0 50 32 16 0 52 1.44
22057--22086 15 2.0 15 93 0 51 33 10 20 36 1.86
29305--29337 17 1.9 17 93 0 57 21 24 12 42 1.86
44337--44381 23 2.0 22 83 12 56 68 6 0 24 1.13
48714--48757 17 2.8 15 77 12 52 38 15 0 45 1.47
63756--63798 21 2.0 21 100 0 86 16 13 0 69 1.19
91820--91874 24 2.5 22 85 8 67 14 23 12 49 1.78
91842--91909 21 3.2 21 77 8 75 11 22 8 57 1.61
94262--94351 18 5.2 18 92 4 132 31 8 25 34 1.87
94278--94338 9 6.8 9 73 0 59 31 6 27 34 1.83
102221--102258 18 2.1 18 90 0 58 23 7 7 60 1.51
110387--110452 32 2.1 32 94 0 114 42 22 9 25 1.83
114859--114900 20 2.0 21 86 13 61 54 21 0 23 1.44
116319--116357 18 2.2 18 100 0 78 58 0 15 25 1.37
123709--123737 14 2.1 14 100 0 58 20 6 6 65 1.40
124605--124634 15 2.0 15 100 0 60 13 13 20 53 1.72
126543--126645 43 2.3 43 93 3 170 32 16 14 36 1.89
134428--134493 32 2.1 32 94 0 114 25 9 22 42 1.83
142625--142662 18 2.1 18 90 0 58 60 7 7 23 1.51
144925--144968 21 2.1 21 86 0 61 47 15 15 20 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
150533--150606 18 4.1 18 98 0 130 33 27 8 31 1.86
150546--150606 9 6.8 9 73 0 59 34 27 6 31 1.83
152975--153064 21 4.1 22 75 12 69 55 8 23 12 1.64
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!