NC_031396.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_031396.1 Taraxacum mongolicum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151451
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
259--285 13 2.1 13 100 0 54 48 22 0 29 1.51
6754--6778 12 2.1 12 100 0 50 76 0 8 16 1.02
9568--9613 22 2.1 22 100 0 92 32 8 21 36 1.84
11844--11881 19 2.0 19 94 0 67 28 28 31 10 1.90
12310--12366 28 2.0 28 96 0 105 36 17 15 29 1.91
12450--12488 19 2.0 20 95 5 71 38 10 15 35 1.81
25073--25097 12 2.1 12 100 0 50 60 8 8 24 1.52
29828--29867 11 4.0 11 75 24 52 45 10 0 45 1.37
29822--29862 18 2.3 18 95 4 75 43 9 0 46 1.36
31087--31116 15 2.0 15 100 0 60 73 0 6 20 1.05
31149--31182 17 2.0 17 94 0 59 29 0 20 50 1.49
31701--31735 18 1.9 18 88 0 52 28 0 11 60 1.32
35105--35130 13 2.0 13 100 0 52 61 0 7 30 1.24
51956--52007 27 2.0 26 84 3 68 30 21 11 36 1.89
54732--54779 16 3.0 16 96 0 87 43 29 0 27 1.55
56465--56514 25 2.0 25 96 0 91 28 10 26 36 1.88
59149--59196 20 2.3 21 92 7 89 45 4 4 45 1.41
64856--64895 21 1.9 21 89 0 62 47 2 7 42 1.45
66517--66548 16 2.0 16 100 0 64 31 12 25 31 1.92
67945--67985 21 2.0 21 95 0 73 31 24 9 34 1.88
75368--75405 19 2.0 19 100 0 76 26 10 21 42 1.85
91341--91383 18 2.4 18 96 0 77 30 13 23 32 1.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
98723--98785 29 2.1 30 85 8 85 25 11 4 58 1.51
106508--106569 32 1.9 32 93 0 106 41 22 8 27 1.82
112126--112160 14 2.4 14 95 4 61 20 2 11 65 1.37
114152--114192 20 2.0 20 100 0 82 48 4 9 36 1.58
128935--128996 32 1.9 32 93 0 106 27 8 22 41 1.82
136719--136781 29 2.1 30 85 8 85 58 4 11 25 1.51
144121--144163 18 2.4 18 96 0 77 32 23 13 30 1.93
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Tables: 1
The End!