NC_031400.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_031400.1 Artemisia capillaris chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151056
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5005--5052 15 3.3 15 85 2 71 52 12 10 25 1.71
8765--8789 12 2.1 12 100 0 50 60 8 0 32 1.26
25037--25061 12 2.1 12 100 0 50 60 8 8 24 1.52
30078--30120 21 2.0 22 90 4 70 48 25 6 18 1.73
45787--45820 17 2.0 17 100 0 68 70 0 17 11 1.16
47623--47657 15 2.4 14 90 9 52 60 20 0 20 1.37
50970--51010 13 3.3 13 80 13 50 36 0 7 56 1.27
50971--51010 11 3.5 11 87 12 55 37 0 7 55 1.29
51702--51736 15 2.3 15 90 0 52 34 14 14 37 1.86
56194--56243 24 2.1 24 96 0 91 36 14 18 32 1.90
65307--65342 17 2.1 17 100 0 72 58 5 19 16 1.58
66753--66793 21 2.0 21 95 0 73 31 24 9 34 1.88
76433--76460 14 2.0 14 100 0 56 42 7 7 42 1.59
82573--82602 15 2.0 15 100 0 60 66 0 0 33 0.92
90050--90127 18 4.3 18 95 0 129 29 10 26 33 1.89
90050--90127 9 8.7 9 68 0 57 29 10 26 33 1.89
97706--97730 10 2.5 10 100 0 50 40 8 0 52 1.31
105717--105778 32 1.9 32 96 0 115 41 20 8 29 1.81
107785--107818 16 2.1 17 94 5 61 50 0 0 50 1.00
111706--111731 11 2.4 11 100 0 52 53 11 7 26 1.63
128100--128161 32 1.9 32 96 0 115 29 8 20 41 1.81
136148--136172 10 2.5 10 100 0 50 52 0 8 40 1.31
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
143751--143828 18 4.3 18 95 0 129 33 26 10 29 1.89
143764--143827 9 7.1 9 70 0 56 34 28 7 29 1.85
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!