NC_031422.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_031422.1 Aconitum kusnezoffii voucher NIBR:VP0000529885 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155862
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4930--4956 13 2.1 13 100 0 54 37 7 7 48 1.59
5187--5224 19 2.0 19 94 0 67 42 2 10 44 1.52
5193--5227 15 2.5 13 86 13 52 42 2 11 42 1.55
8191--8228 19 2.0 19 100 0 76 57 10 15 15 1.64
13288--13325 20 1.9 20 100 0 76 31 5 28 34 1.80
23128--23167 20 2.0 20 100 0 80 40 15 20 25 1.90
27098--27139 21 2.0 21 90 0 66 28 9 28 33 1.88
48861--48908 23 2.1 23 96 0 87 58 4 8 29 1.46
67573--67608 17 2.1 17 94 0 63 30 16 2 50 1.60
69446--69497 23 2.3 22 84 12 70 65 1 0 32 1.04
69440--69483 19 2.4 19 92 3 72 63 2 0 34 1.07
70150--70184 18 1.9 18 94 0 61 11 34 5 48 1.63
73047--73072 13 2.0 13 100 0 52 38 0 7 53 1.30
81249--81296 24 2.0 24 91 0 78 25 33 16 25 1.96
82545--82585 17 2.4 17 83 0 55 29 17 9 43 1.80
85497--85538 21 2.0 21 85 0 57 23 26 9 40 1.85
90643--90711 21 3.2 22 78 12 72 11 23 10 55 1.66
93055--93124 9 8.1 9 70 9 56 32 5 24 37 1.79
93062--93124 18 3.7 18 85 6 78 33 6 25 34 1.81
93050--93121 24 3.3 23 70 23 66 31 6 23 37 1.82
94380--94419 15 2.7 15 96 0 71 40 10 32 17 1.83
100919--100968 21 2.5 21 84 9 61 14 10 2 74 1.16
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
100940--100991 27 1.9 27 84 7 70 15 11 0 73 1.11
112629--112659 15 2.1 15 100 0 62 58 0 0 41 0.98
112649--112692 21 2.0 21 82 13 52 63 2 2 31 1.19
125238--125269 16 2.0 16 100 0 64 62 18 0 18 1.33
127636--127689 24 2.3 24 71 9 58 20 9 11 59 1.59
128871--128895 12 2.1 12 100 0 50 48 24 0 28 1.52
141207--141258 27 1.9 27 84 7 70 73 0 11 15 1.11
147779--147818 15 2.7 15 96 0 71 17 32 10 40 1.83
149074--149120 18 2.6 18 93 0 76 34 27 4 34 1.77
149074--149143 9 8.1 9 71 9 56 37 24 5 32 1.79
151488--151555 21 3.2 21 81 10 77 54 10 23 11 1.67
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Tables: 1
The End!