NC_031429.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_031429.1 Cajanus cajan chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153841
Tables: 1
This is table 1 of 1 ( 63 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
189--222 11 3.0 11 91 4 50 41 0 0 58 0.98
1714--1756 21 2.0 21 100 0 86 44 13 4 37 1.65
5331--5366 12 3.0 12 91 0 54 47 0 16 36 1.47
7342--7380 17 2.5 15 84 12 51 53 5 17 23 1.63
7343--7376 17 2.0 17 100 0 68 52 5 17 23 1.66
15018--15071 10 5.6 10 73 8 58 40 14 0 44 1.46
15019--15076 19 3.1 19 100 0 116 43 15 0 41 1.47
15643--15668 13 2.0 13 100 0 52 30 7 0 61 1.24
16472--16511 20 2.0 20 100 0 80 40 15 10 35 1.80
18132--18157 13 2.0 13 100 0 52 46 7 0 46 1.31
19197--19229 16 2.1 16 94 0 57 45 6 0 48 1.27
25401--25460 27 2.2 27 88 8 86 40 3 0 56 1.16
25510--25547 11 3.5 11 78 7 51 23 15 0 60 1.35
25505--25546 21 2.0 21 100 0 84 28 14 0 57 1.38
25546--25587 10 4.3 10 79 14 52 64 0 7 28 1.20
29227--29265 10 3.9 10 87 12 62 51 0 15 33 1.44
29228--29268 20 2.0 20 100 0 82 48 0 14 36 1.44
33559--33597 18 2.1 19 85 4 53 17 7 5 69 1.32
34613--34640 13 2.2 13 100 0 56 53 0 14 32 1.41
47662--47692 15 2.1 15 100 0 62 48 12 12 25 1.77
47665--47698 15 2.3 15 89 0 50 50 8 14 26 1.72
52095--52132 15 2.5 15 95 0 67 55 5 7 31 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
52314--52355 21 2.0 21 95 0 75 35 11 9 42 1.74
52477--52514 19 2.0 19 85 10 51 60 5 10 23 1.50
53706--53730 13 1.9 13 100 0 50 72 0 8 20 1.10
53740--53771 17 1.9 16 93 6 55 56 0 6 37 1.25
53762--53798 11 3.6 11 79 20 53 70 0 10 18 1.16
53761--53798 19 2.0 19 100 0 76 68 0 10 21 1.19
54986--55027 23 1.9 23 85 9 61 23 4 7 64 1.38
55053--55083 16 1.9 16 100 0 62 74 6 0 19 1.03
55645--55693 17 2.9 17 84 3 64 40 8 10 40 1.69
56523--56552 1 30.0 1 93 0 51 96 0 3 0 0.21
62623--62665 5 8.0 5 85 14 59 55 2 4 37 1.33
62623--62665 11 3.9 11 93 0 77 55 2 4 37 1.33
62622--62665 22 2.0 22 100 0 88 54 4 4 36 1.41
62951--62990 19 2.1 19 95 0 71 52 7 7 32 1.58
63069--63104 18 2.0 18 100 0 72 55 5 11 27 1.57
63220--63246 13 2.1 13 100 0 54 70 0 7 22 1.12
64451--64475 13 1.9 13 100 0 50 36 0 8 56 1.29
67433--67481 20 2.4 20 82 3 62 32 12 0 55 1.37
67441--67471 16 1.9 16 93 0 53 29 12 0 58 1.35
78771--78816 22 2.1 22 100 0 92 21 17 8 52 1.71
79478--79561 13 6.3 13 72 22 68 58 0 1 40 1.06
79483--79566 10 8.8 10 74 20 65 59 0 1 39 1.05
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
79515--79575 31 2.0 31 83 0 77 63 0 0 36 0.94
79478--79576 46 2.2 48 85 10 138 61 0 1 37 1.03
84088--84129 14 2.6 17 75 25 54 47 0 0 52 1.00
89578--89629 21 2.5 21 93 0 95 7 21 9 61 1.51
90863--90925 21 3.0 21 100 0 126 38 4 28 28 1.77
92040--92088 9 5.4 9 87 0 71 34 6 30 28 1.82
92033--92089 18 3.2 18 87 0 87 33 5 28 33 1.79
99392--99430 15 2.6 15 83 0 51 12 5 0 82 0.83
99392--99431 19 2.2 18 86 13 55 12 5 0 82 0.82
99403--99434 11 2.8 12 86 13 50 9 6 0 84 0.78
109677--109727 25 2.0 25 92 0 84 58 9 9 21 1.58
119886--119934 26 1.9 26 83 4 64 61 6 6 26 1.43
128568--128618 25 2.0 25 92 0 84 21 9 9 58 1.58
138861--138892 11 2.8 12 86 13 50 84 0 6 9 0.78
138864--138903 19 2.2 17 86 8 53 82 0 5 12 0.82
146206--146262 18 3.2 18 87 0 87 33 28 5 33 1.79
146207--146259 9 5.9 9 88 0 70 30 30 5 33 1.81
147370--147432 21 3.0 21 100 0 126 28 28 4 38 1.77
148666--148717 21 2.5 21 93 0 95 61 9 21 7 1.51
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Tables: 1
The End!