NC_031437.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_031437.1 Scrophularia buergeriana isolate PDBK2014-1538 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153631
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
85--109 12 2.1 12 100 0 50 32 16 0 52 1.44
109--150 17 2.4 18 92 8 77 30 9 4 54 1.53
9939--9973 17 2.1 17 100 0 70 28 11 5 54 1.59
28949--28984 18 2.0 18 100 0 72 38 0 22 38 1.54
37767--37820 27 2.0 27 100 0 108 44 11 18 25 1.83
46166--46196 15 2.1 15 100 0 62 45 12 6 35 1.68
47033--47065 13 2.5 13 95 0 57 75 0 18 6 1.00
47093--47131 13 3.1 13 88 3 62 38 0 0 61 0.96
60922--60966 21 2.1 21 100 0 90 31 22 15 31 1.95
64076--64107 16 2.0 16 100 0 64 25 18 0 56 1.42
64128--64162 17 2.1 17 100 0 70 45 5 20 28 1.73
67840--67874 17 2.0 18 88 5 54 2 25 0 71 1.00
68564--68604 21 2.0 21 90 0 64 31 26 7 34 1.84
74732--74769 19 2.0 19 100 0 76 52 15 10 21 1.72
74785--74822 18 2.1 18 100 0 76 39 10 10 39 1.74
79817--79863 24 2.0 24 82 0 58 31 29 12 25 1.93
86647--86686 20 2.0 20 90 0 62 47 5 20 27 1.70
89257--89311 24 2.5 22 85 8 67 14 23 12 49 1.78
89279--89346 21 3.2 21 77 8 75 11 22 8 57 1.61
91687--91764 18 4.3 18 90 0 129 30 8 25 34 1.87
91688--91751 9 7.1 9 70 0 56 31 6 26 35 1.81
99573--99620 10 4.5 11 85 14 66 33 0 16 50 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
108164--108447 142 2.0 142 100 0 568 19 25 18 36 1.94
111760--111798 20 2.0 20 85 10 53 56 23 0 20 1.42
113996--114022 13 2.1 13 100 0 54 33 29 0 37 1.58
119400--119435 18 2.0 18 100 0 72 16 22 11 50 1.77
123396--123423 13 2.2 13 100 0 56 28 7 14 50 1.69
126702--126736 14 2.5 14 90 0 61 0 17 5 77 0.96
129639--129922 142 2.0 142 100 0 568 36 18 25 19 1.94
138446--138513 17 4.1 16 78 17 59 48 19 1 30 1.58
138466--138507 10 4.0 10 82 17 50 50 19 0 30 1.48
138466--138507 22 2.0 21 90 9 68 50 19 0 30 1.48
146322--146399 18 4.3 18 90 0 129 34 25 8 30 1.87
148740--148829 21 4.1 22 75 8 76 54 10 23 12 1.67
151400--151439 20 2.0 20 90 0 62 27 20 5 47 1.70
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Tables: 1
The End!