NC_032008.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_032008.1 Citrullus lanatus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156906
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4624--4654 11 2.8 11 95 0 53 64 0 0 35 0.94
9068--9107 19 2.0 20 90 4 64 15 22 0 62 1.32
9103--9167 16 3.9 16 78 7 76 47 1 6 44 1.37
10577--10632 11 5.1 11 77 16 53 50 0 0 50 1.00
10579--10632 2 29.0 2 75 14 53 50 0 0 50 1.00
10579--10641 17 3.8 17 91 4 94 50 0 0 49 1.00
10579--10641 33 1.9 33 87 6 92 50 0 0 49 1.00
11131--11157 13 2.1 13 100 0 54 55 7 14 22 1.64
29846--29881 17 2.1 17 89 0 54 44 2 13 38 1.59
32911--32940 10 3.0 10 100 0 60 30 0 30 40 1.57
34366--34410 20 2.2 21 88 4 65 37 13 4 44 1.64
38270--38303 17 2.0 17 100 0 68 64 0 5 29 1.17
38299--38350 13 3.8 13 73 14 50 36 17 15 30 1.91
61692--61725 12 3.0 12 91 8 54 61 8 0 29 1.26
67821--67857 17 2.2 17 95 0 65 37 2 5 54 1.38
91517--91572 24 2.5 24 85 8 73 14 17 14 53 1.73
91537--91605 21 3.3 21 81 2 77 11 21 8 57 1.60
93965--94021 18 3.2 18 94 0 105 31 5 28 35 1.79
93965--94021 9 6.3 9 72 0 51 31 5 28 35 1.79
110063--110128 32 2.1 32 97 0 123 40 24 9 25 1.84
133624--133689 32 2.1 32 97 0 123 25 9 24 40 1.84
149731--149787 18 3.2 18 94 0 105 35 28 5 31 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
149731--149787 9 6.3 9 72 0 51 35 28 5 31 1.79
152164--152215 21 2.5 21 87 0 77 59 11 19 9 1.59
152179--152235 24 2.5 22 86 8 71 54 14 17 14 1.71
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!