NC_034308.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034308.1 Rehmannia glutinosa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153622
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8206--8245 20 2.0 20 100 0 80 25 20 0 55 1.44
15291--15331 19 2.1 19 86 4 55 43 14 2 39 1.59
17599--17641 21 2.0 21 100 0 86 30 4 23 41 1.74
31483--31514 16 2.0 16 100 0 64 31 6 12 50 1.65
36145--36178 1 34.0 1 93 0 59 97 0 0 2 0.19
47027--47052 12 2.2 12 100 0 52 50 0 7 42 1.31
47256--47297 18 2.3 18 91 0 66 35 2 11 50 1.52
47264--47299 18 2.0 18 100 0 72 33 5 11 50 1.61
47568--47593 13 2.0 13 100 0 52 53 15 0 30 1.42
49253--49278 13 2.0 13 100 0 52 53 7 23 15 1.67
55149--55181 13 2.5 14 85 14 52 72 0 0 27 0.85
60592--60636 21 2.1 21 100 0 90 31 22 15 31 1.95
62866--62910 24 2.0 24 86 8 67 48 11 0 40 1.39
62875--62918 24 1.9 23 86 9 63 47 11 0 40 1.39
68008--68042 17 2.0 18 88 5 54 2 25 0 71 1.00
68760--68800 21 2.0 21 95 0 73 29 26 9 34 1.88
70616--70657 20 2.1 20 100 0 84 30 4 4 59 1.39
79962--80008 24 2.0 24 86 0 67 29 29 14 25 1.95
89349--89403 24 2.5 22 85 8 67 14 23 12 49 1.78
89371--89438 21 3.2 21 77 8 75 11 22 8 57 1.61
91761--91850 18 5.2 18 90 4 123 30 8 25 35 1.86
99662--99686 10 2.5 10 100 0 50 40 0 8 52 1.31
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
107637--107697 31 2.0 31 90 0 95 40 19 11 27 1.86
130532--130592 31 2.0 31 90 0 95 27 11 19 40 1.86
138543--138567 10 2.5 10 100 0 50 52 8 0 40 1.31
146379--146456 18 4.3 18 95 0 120 33 26 10 29 1.89
146387--146468 18 4.8 16 85 10 76 36 25 8 29 1.86
148791--148880 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!