NC_034321.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034321.1 Echinacea pallida plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151883
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10711--10758 24 2.0 24 100 0 96 45 8 8 37 1.64
11171--11204 14 2.5 14 95 4 61 0 17 5 76 0.98
12165--12190 12 2.2 12 100 0 52 61 0 23 15 1.33
30124--30149 13 2.0 13 100 0 52 38 0 23 38 1.55
32190--32240 10 5.1 10 80 0 66 66 0 5 27 1.14
32188--32240 20 2.7 20 100 0 106 64 0 5 30 1.17
34871--34896 13 2.0 13 100 0 52 38 7 23 30 1.83
41743--41768 13 2.0 13 100 0 52 30 7 15 46 1.74
46374--46417 22 2.0 22 100 0 88 68 0 18 13 1.22
50805--50838 15 2.2 15 94 5 59 17 0 11 70 1.16
51544--51573 15 2.0 15 93 0 51 36 16 13 33 1.88
58419--58448 15 2.0 15 93 0 51 56 6 10 26 1.57
58643--58680 20 1.9 20 89 10 60 47 5 7 39 1.55
58665--58692 12 2.3 12 100 0 56 57 0 7 35 1.26
58648--58718 32 2.1 33 82 12 83 50 5 5 38 1.49
63057--63105 22 2.2 22 96 0 89 20 8 12 59 1.58
67475--67515 21 2.0 21 95 0 73 31 24 9 34 1.88
67941--67968 14 2.0 14 100 0 56 21 14 7 57 1.61
78431--78465 9 4.0 9 85 7 54 0 25 11 62 1.28
78433--78467 17 2.1 17 100 0 70 0 28 11 60 1.32
90874--90942 9 7.7 9 70 0 57 28 11 26 33 1.91
90880--90942 18 3.5 18 100 0 126 28 11 26 33 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
98519--98565 23 2.0 23 95 0 85 31 10 8 48 1.68
106563--106624 32 1.9 32 93 0 106 41 22 8 27 1.82
106910--106935 13 2.0 13 100 0 52 23 15 7 53 1.67
112078--112117 21 1.9 21 100 0 80 20 2 35 42 1.65
117927--117951 12 2.1 12 100 0 50 32 0 8 60 1.26
117938--117979 21 2.0 21 100 0 84 28 9 4 57 1.51
122988--123033 23 2.0 23 86 0 65 28 4 8 58 1.47
124405--124453 24 2.0 24 100 0 98 48 4 8 38 1.52
126772--126806 11 3.0 12 91 4 54 25 8 8 57 1.57
126773--126807 12 3.0 12 91 4 54 28 8 8 54 1.60
128547--128572 13 2.0 13 100 0 52 53 7 15 23 1.67
128858--128919 32 1.9 32 93 0 106 27 8 22 41 1.82
136917--136963 23 2.0 23 95 0 85 48 8 10 31 1.68
144540--144602 18 3.5 18 100 0 126 33 26 11 28 1.91
144540--144608 9 7.7 9 70 0 57 33 26 11 28 1.91
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Tables: 1
The End!