NC_034323.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034323.1 Echinacea atrorubens plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151912
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10718--10765 24 2.0 24 100 0 96 45 8 8 37 1.64
11183--11219 14 2.6 14 95 0 65 0 18 5 75 0.99
15382--15412 15 2.1 15 100 0 62 35 6 25 32 1.82
30168--30193 13 2.0 13 100 0 52 38 0 23 38 1.55
32233--32283 10 5.1 10 80 0 66 66 0 5 27 1.14
32231--32283 20 2.7 20 100 0 106 64 0 5 30 1.17
34914--34939 13 2.0 13 100 0 52 38 7 23 30 1.83
46242--46275 17 2.0 17 94 0 59 67 2 17 11 1.34
46405--46448 22 2.0 22 100 0 88 68 0 18 13 1.22
50835--50881 23 2.0 23 92 8 78 17 2 8 72 1.19
51583--51612 15 2.0 15 93 0 51 36 16 13 33 1.88
58459--58488 15 2.0 15 93 0 51 56 6 10 26 1.57
58683--58720 20 1.9 20 89 10 60 47 5 7 39 1.55
58705--58732 12 2.3 12 100 0 56 57 0 7 35 1.26
58688--58758 32 2.1 33 82 12 83 50 5 5 38 1.49
63100--63148 22 2.2 22 96 0 89 20 8 12 59 1.58
67511--67551 21 2.0 21 95 0 73 31 24 9 34 1.88
67977--68004 14 2.0 14 100 0 56 21 14 7 57 1.61
78470--78504 9 4.0 9 85 7 54 0 25 11 62 1.28
78472--78506 17 2.1 17 100 0 70 0 28 11 60 1.32
90912--90980 9 7.7 9 70 0 57 28 11 26 33 1.91
90918--90980 18 3.5 18 100 0 126 28 11 26 33 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
98557--98603 23 2.0 23 95 0 85 31 10 8 48 1.68
106600--106661 32 1.9 32 93 0 106 41 22 8 27 1.82
106947--106972 13 2.0 13 100 0 52 23 15 7 53 1.67
112114--112153 21 1.9 21 100 0 80 20 2 35 42 1.65
117962--117986 12 2.1 12 100 0 50 32 0 8 60 1.26
122988--123033 23 2.0 23 86 0 65 28 4 8 58 1.47
124396--124444 24 2.0 24 100 0 98 48 4 8 38 1.52
126763--126820 11 5.0 12 87 6 84 25 8 8 56 1.58
126764--126821 12 5.0 12 87 6 84 27 8 8 55 1.60
126764--126819 23 2.4 23 100 0 112 25 8 8 57 1.58
126823--126866 21 2.1 21 100 0 88 50 18 4 27 1.66
128577--128602 13 2.0 13 100 0 52 53 7 15 23 1.67
128888--128949 32 1.9 32 93 0 106 27 8 22 41 1.82
136946--136992 23 2.0 23 95 0 85 48 8 10 31 1.68
144569--144631 18 3.5 18 100 0 126 33 26 11 28 1.91
144569--144637 9 7.7 9 70 0 57 33 26 11 28 1.91
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Tables: 1
The End!