NC_034324.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034324.1 Echinacea angustifolia plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151935
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
11145--11178 14 2.5 14 90 4 52 2 14 5 76 1.09
25279--25303 12 2.1 12 100 0 50 60 8 8 24 1.52
30095--30120 13 2.0 13 100 0 52 38 0 23 38 1.55
32147--32187 20 2.0 20 90 0 64 60 0 9 29 1.28
34810--34835 13 2.0 13 100 0 52 38 7 23 30 1.83
46144--46177 17 2.0 17 100 0 68 70 0 17 11 1.16
46307--46350 22 2.0 22 100 0 88 68 0 18 13 1.22
46535--46582 23 2.1 23 100 0 96 58 4 8 29 1.46
50764--50811 21 2.3 20 92 3 78 18 2 6 72 1.15
51517--51546 15 2.0 15 93 0 51 36 16 13 33 1.88
58388--58417 15 2.0 15 93 0 51 56 6 10 26 1.57
58535--58564 15 2.0 15 100 0 60 40 26 0 33 1.57
58627--58664 20 1.9 20 89 10 60 47 5 7 39 1.55
58649--58676 12 2.3 12 100 0 56 57 0 7 35 1.26
58632--58702 32 2.1 33 82 12 83 50 5 5 38 1.49
63048--63096 22 2.2 22 96 0 89 20 8 12 59 1.58
64591--64617 10 2.7 10 100 0 54 11 11 0 77 0.99
67475--67515 21 2.0 21 95 0 73 31 24 9 34 1.88
67941--67968 14 2.0 14 100 0 56 21 14 7 57 1.61
78435--78469 9 4.0 9 85 7 54 0 25 11 62 1.28
78437--78471 17 2.1 17 100 0 70 0 28 11 60 1.32
81167--81219 25 2.0 26 82 13 65 43 7 7 41 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
90900--90968 9 7.7 9 70 0 57 28 11 26 33 1.91
90906--90968 18 3.5 18 100 0 126 28 11 26 33 1.91
98545--98591 23 2.0 23 95 0 85 31 10 8 48 1.68
106588--106649 32 1.9 32 93 0 106 41 22 8 27 1.82
106935--106960 13 2.0 13 100 0 52 23 15 7 53 1.67
112106--112145 21 1.9 21 100 0 80 20 2 35 42 1.65
116259--116284 1 26.0 1 100 0 52 100 0 0 0 0.00
117952--117984 17 2.0 16 94 5 57 27 0 18 54 1.44
117977--118018 21 2.0 21 100 0 84 28 9 4 57 1.51
122634--122673 20 2.0 20 100 0 80 45 5 0 50 1.23
123038--123087 23 2.2 23 85 3 66 30 4 8 58 1.45
124036--124086 25 2.0 25 96 0 93 62 11 1 23 1.39
126815--126849 11 3.0 11 84 15 52 17 8 8 65 1.44
126815--126849 13 2.8 13 91 8 56 17 8 8 65 1.44
128591--128616 13 2.0 13 100 0 52 53 7 15 23 1.67
128902--128963 32 1.9 32 93 0 106 27 8 22 41 1.82
136960--137006 23 2.0 23 95 0 85 48 8 10 31 1.68
144583--144645 18 3.5 18 100 0 126 33 26 11 28 1.91
144583--144651 9 7.7 9 70 0 57 33 26 11 28 1.91
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Tables: 1
The End!