NC_034369.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034369.1 Fritillaria ussuriensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151524
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5492--5521 13 2.3 13 94 0 51 46 0 0 53 1.00
5974--6007 14 2.5 14 95 4 61 58 0 0 41 0.98
9238--9263 13 2.0 13 100 0 52 30 7 0 61 1.24
28178--28217 13 3.1 13 89 10 64 50 0 0 50 1.00
44436--44513 12 6.0 12 72 19 59 52 2 1 43 1.23
44441--44522 17 4.6 17 71 14 76 51 2 1 45 1.22
44416--44530 54 2.1 54 98 0 221 49 3 1 45 1.29
46104--46129 13 2.0 13 100 0 52 46 15 0 38 1.46
54355--54387 15 2.1 16 94 5 59 18 0 9 72 1.10
56603--56664 25 2.4 25 75 5 61 43 6 1 48 1.38
64853--64880 13 2.2 13 100 0 56 7 0 0 92 0.37
75273--75340 33 2.1 33 97 0 127 48 8 1 41 1.43
76805--76853 24 2.0 24 92 0 80 28 32 12 26 1.92
78034--78101 24 2.5 28 77 20 90 51 0 0 48 1.00
78043--78094 24 2.2 24 100 0 104 55 0 0 44 0.99
79274--79313 13 3.1 13 81 0 53 17 0 10 72 1.11
81463--81487 1 25.0 1 100 0 50 100 0 0 0 0.00
86575--86622 21 2.3 21 96 0 87 12 33 8 45 1.72
88915--88971 24 2.4 24 100 0 114 29 8 24 36 1.86
110498--110548 22 2.3 23 79 3 59 33 3 3 58 1.35
115024--115123 47 2.1 47 94 1 173 48 3 6 43 1.43
115020--115090 17 4.5 17 67 15 53 45 1 4 49 1.30
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115033--115117 21 3.8 21 75 15 80 50 3 5 40 1.44
115031--115134 47 2.2 47 87 3 147 48 4 6 40 1.51
122437--122466 15 2.0 15 93 0 51 43 10 0 46 1.37
144286--144342 24 2.4 24 100 0 114 36 24 8 29 1.86
146635--146682 21 2.2 22 92 7 89 45 8 33 12 1.72
146642--146696 21 2.5 21 88 8 74 43 10 29 16 1.82
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Tables: 1
The End!