NC_034671.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034671.1 Citrus reticulata plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160100
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6565--6616 20 2.8 19 86 11 65 65 1 11 21 1.34
8925--8949 12 2.1 12 100 0 50 60 0 24 16 1.36
8962--8992 16 1.9 16 93 0 53 48 9 12 29 1.73
10600--10635 1 36.0 1 88 0 54 94 0 5 0 0.31
10603--10635 13 2.5 13 100 0 66 93 0 6 0 0.33
13434--13465 15 2.1 15 100 0 64 31 6 0 62 1.20
31886--31923 17 2.2 17 100 0 76 34 10 0 55 1.34
34178--34214 18 2.1 18 100 0 74 24 10 32 32 1.90
34662--34707 22 2.1 22 100 0 92 45 0 17 36 1.49
34725--34752 14 2.0 14 100 0 56 50 7 21 21 1.72
39261--39290 15 2.0 15 93 0 51 43 3 0 53 1.17
39754--39803 24 2.1 24 100 0 100 38 12 16 34 1.85
45742--45775 16 2.1 16 94 0 59 64 5 2 26 1.30
58268--58309 21 2.0 21 100 0 84 23 19 9 47 1.78
61273--61314 18 2.3 18 100 0 84 45 11 23 19 1.83
62738--62786 25 2.0 24 92 4 80 44 8 4 42 1.53
72161--72199 21 1.9 21 89 5 62 33 25 10 30 1.89
81281--81311 16 1.9 16 100 0 62 12 9 0 77 0.99
88933--88978 23 2.0 23 100 0 92 47 17 8 26 1.76
93111--93185 21 3.2 24 70 16 68 10 24 8 57 1.59
95559--95594 18 2.0 18 94 0 63 30 8 27 33 1.86
103349--103381 16 2.0 17 94 5 59 6 9 0 84 0.76
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
103886--103923 18 2.1 18 95 0 67 23 7 5 63 1.42
112021--112082 32 1.9 32 96 0 115 38 24 9 27 1.86
114697--114733 15 2.5 15 95 0 65 64 0 13 21 1.27
117421--117464 20 2.2 20 100 0 88 54 4 4 36 1.41
118100--118142 19 2.5 16 80 20 59 48 9 13 27 1.73
118106--118143 19 2.0 19 100 0 76 42 10 15 31 1.81
122991--123030 19 2.1 19 100 0 80 50 10 15 25 1.74
135749--135810 32 1.9 32 96 0 115 27 9 24 38 1.86
143908--143945 18 2.1 18 95 0 67 63 5 7 23 1.42
144450--144482 16 2.0 17 94 5 59 84 0 9 6 0.76
152237--152272 18 2.0 18 94 0 63 33 27 8 30 1.86
158853--158898 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!