NC_034680.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034680.1 Cynodon dactylon chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 134297
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6590--6615 13 2.0 13 100 0 52 53 15 0 30 1.42
8323--8366 22 2.0 22 100 0 88 31 18 4 45 1.69
12419--12457 19 2.1 19 95 0 69 25 12 33 28 1.93
14761--14890 67 1.9 67 84 0 170 29 17 26 26 1.98
17308--17338 15 2.0 16 93 6 55 12 12 0 74 1.08
18549--18615 35 1.9 35 93 0 116 28 10 16 44 1.80
24744--24783 21 1.9 21 100 0 80 27 27 15 30 1.96
26715--26796 21 3.9 21 88 0 110 37 14 32 14 1.87
26801--26918 21 5.6 21 68 23 70 44 16 23 15 1.85
26798--26918 42 2.9 42 90 6 176 44 16 23 15 1.86
26987--27029 21 2.0 21 86 0 59 44 13 25 16 1.85
41804--41835 16 2.0 16 100 0 64 56 6 12 25 1.59
46023--46057 18 1.9 18 94 0 61 37 2 20 40 1.67
50471--50504 17 2.0 17 94 0 59 35 2 8 52 1.47
50754--50814 24 2.5 24 86 5 70 62 9 9 18 1.53
50761--50813 24 2.3 23 87 6 79 60 9 9 20 1.55
51627--51660 17 2.0 17 94 0 59 47 20 5 26 1.73
56767--56792 13 2.0 13 100 0 52 38 7 7 46 1.61
60413--60452 20 2.0 20 95 0 71 5 12 15 67 1.38
62182--62269 22 4.0 22 100 0 176 45 13 13 27 1.81
63105--63148 22 2.0 22 100 0 88 22 18 13 45 1.84
64719--64773 9 6.1 9 82 14 69 23 0 0 76 0.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
64734--64773 20 2.0 20 100 0 80 25 0 0 75 0.81
64736--64775 11 3.9 10 87 12 55 25 0 0 75 0.81
64804--64839 18 2.0 18 100 0 72 44 16 11 27 1.82
64921--65041 21 5.8 21 85 0 161 38 26 6 28 1.81
67692--67753 17 3.5 17 82 6 61 48 9 8 33 1.65
67709--67753 17 2.5 17 89 7 63 51 8 8 31 1.64
75742--75781 18 2.2 18 86 0 53 2 20 7 70 1.24
75752--75794 18 2.4 18 92 0 68 6 13 2 76 1.08
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Tables: 1
The End!