NC_034683.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034683.1 Artemisia annua plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 150952
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1959--2006 16 3.1 16 77 14 55 27 6 0 66 1.15
2005--2031 13 2.1 13 100 0 54 29 0 14 55 1.40
5011--5058 15 3.3 15 91 2 80 54 10 10 25 1.66
25052--25076 12 2.1 12 100 0 50 60 8 8 24 1.52
30116--30158 21 2.0 22 86 4 61 48 27 6 16 1.71
35517--35541 13 1.9 13 100 0 50 64 0 8 28 1.22
45792--45825 17 2.0 17 100 0 68 70 0 17 11 1.16
47624--47661 9 4.1 9 93 6 67 57 21 0 21 1.40
47624--47661 19 2.1 18 95 5 67 57 21 0 21 1.40
47624--47668 5 9.2 5 77 22 51 60 20 0 20 1.37
51692--51726 15 2.3 15 90 0 52 34 14 14 37 1.86
51939--51967 15 2.0 15 93 6 51 24 0 6 68 1.13
56179--56228 24 2.1 24 96 0 91 36 14 16 34 1.88
65282--65317 17 2.1 17 100 0 72 58 5 19 16 1.58
66728--66768 21 2.0 21 95 0 73 31 24 9 34 1.88
76412--76439 14 2.0 14 100 0 56 42 7 7 42 1.59
89990--90064 18 4.4 17 88 8 73 29 8 25 37 1.84
90001--90064 9 7.1 9 74 0 65 29 7 26 35 1.85
90000--90077 18 4.3 18 96 0 138 29 10 25 34 1.89
97656--97680 10 2.5 10 100 0 50 40 8 0 52 1.31
105668--105729 32 1.9 32 93 0 106 41 19 8 30 1.80
127996--128057 32 1.9 32 93 0 106 30 8 19 41 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
136045--136069 10 2.5 10 100 0 50 52 0 8 40 1.31
143648--143725 18 4.3 18 96 0 138 34 25 10 29 1.89
143648--143725 9 8.7 9 71 0 66 34 25 10 29 1.89
143697--143735 18 2.4 16 87 12 53 41 23 5 30 1.76
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Tables: 1
The End!