NC_034689.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034689.1 Illicium verum plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 143187
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
916--945 14 2.1 14 100 0 60 20 23 6 50 1.71
2407--2431 12 2.1 12 100 0 50 60 0 40 0 0.97
10102--10127 13 2.0 13 100 0 52 53 7 15 23 1.67
16314--16347 9 3.7 9 84 7 50 32 14 8 44 1.76
28874--28918 20 2.2 20 96 0 81 37 4 13 44 1.64
32646--32701 28 2.0 28 100 0 112 39 25 14 21 1.91
33350--33393 17 2.6 16 92 7 70 47 0 0 52 1.00
33358--33392 12 2.9 12 91 0 52 45 0 0 54 0.99
38398--38430 16 2.1 16 100 0 66 51 18 6 24 1.68
38400--38436 16 2.3 16 90 0 56 54 16 2 27 1.56
38664--38705 21 2.0 21 95 0 75 35 11 19 33 1.88
48268--48297 15 2.0 15 93 0 51 33 36 3 26 1.73
49638--49696 30 1.9 31 83 10 77 44 5 0 50 1.24
49640--49672 13 2.7 13 90 9 52 42 6 0 51 1.26
60861--60891 12 2.6 12 94 0 53 32 6 22 38 1.80
62351--62382 15 2.1 15 94 0 55 43 6 9 40 1.62
65138--65162 11 2.3 11 100 0 50 20 24 0 56 1.43
65326--65355 15 2.0 15 100 0 60 26 6 13 53 1.64
71516--71559 21 2.1 21 91 0 70 31 20 13 34 1.92
74732--74759 9 3.1 9 100 0 56 10 53 10 25 1.67
82765--82813 24 2.0 24 96 0 89 32 30 8 28 1.86
85285--85322 16 2.5 15 87 8 58 42 7 7 42 1.63
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
85293--85324 16 2.0 16 100 0 64 43 12 6 37 1.68
85653--85678 13 2.0 13 100 0 52 15 15 0 69 1.20
92379--92424 21 2.2 21 84 3 58 13 26 4 56 1.55
107191--107256 18 3.4 18 69 25 53 36 13 21 28 1.91
110160--110200 21 2.0 21 85 9 57 51 2 7 39 1.43
111133--111166 16 2.1 17 94 5 61 55 5 11 26 1.58
125309--125369 27 2.3 27 97 0 113 16 16 6 60 1.55
126028--126066 15 2.6 15 91 0 60 5 23 2 69 1.21
126336--126390 27 2.0 27 100 0 110 30 14 14 40 1.86
126336--126404 27 2.6 27 90 4 95 30 11 15 42 1.83
128538--128603 18 3.4 18 69 25 53 28 21 13 36 1.91
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!