NC_034690.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034690.1 Citrus limon plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160101
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8905--8929 12 2.1 12 100 0 50 16 24 0 60 1.36
8958--8988 16 1.9 16 93 0 53 48 9 12 29 1.73
13426--13457 15 2.1 15 100 0 64 31 6 0 62 1.20
31884--31920 17 2.2 17 100 0 74 32 10 0 56 1.34
34177--34213 18 2.1 18 100 0 74 24 10 32 32 1.90
34667--34712 22 2.1 22 100 0 92 45 0 17 36 1.49
34730--34757 14 2.0 14 100 0 56 50 7 21 21 1.72
39516--39546 10 3.1 10 95 0 53 48 0 3 48 1.17
39759--39808 24 2.1 24 100 0 100 38 12 16 34 1.85
45756--45789 16 2.1 16 94 0 59 64 5 2 26 1.30
51906--51936 15 2.1 15 93 0 53 9 3 0 87 0.66
58255--58297 21 2.0 22 95 4 79 23 18 11 46 1.82
61266--61307 18 2.3 18 100 0 84 45 11 23 19 1.83
62721--62769 25 2.0 24 92 4 80 44 8 4 42 1.53
72136--72174 21 1.9 21 89 5 62 33 25 10 30 1.89
81268--81298 16 1.9 16 100 0 62 12 9 0 77 0.99
88919--88964 23 2.0 23 100 0 92 47 17 8 26 1.76
93097--93171 21 3.2 24 70 16 68 10 24 8 57 1.59
95551--95586 18 2.0 18 100 0 72 27 11 27 33 1.91
103343--103381 12 3.2 12 85 10 53 7 5 0 87 0.68
103347--103385 10 4.1 9 83 9 51 10 2 0 87 0.65
103881--103918 18 2.1 18 95 0 67 23 7 5 63 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112016--112077 32 1.9 32 96 0 115 38 24 9 27 1.86
117415--117458 20 2.2 20 95 0 79 56 4 4 34 1.40
118103--118145 19 2.5 16 80 20 59 48 9 13 27 1.73
118109--118146 19 2.0 19 100 0 76 42 10 15 31 1.81
122995--123034 19 2.1 19 100 0 80 50 10 15 25 1.74
135745--135806 32 1.9 32 96 0 115 27 9 24 38 1.86
143904--143941 18 2.1 18 95 0 67 63 5 7 23 1.42
144437--144475 10 4.1 9 83 9 51 87 0 2 10 0.65
152236--152271 18 2.0 18 100 0 72 33 27 11 27 1.91
158858--158903 23 2.0 23 100 0 92 26 8 17 47 1.76
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!