NC_034692.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034692.1 Piper nigrum plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161523
Tables: 1
This is table 1 of 1 ( 55 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1958--1992 18 1.9 18 100 0 70 28 8 22 40 1.84
4543--4598 8 7.1 8 76 15 55 80 3 0 16 0.85
4535--4605 23 3.1 24 86 11 96 76 5 0 18 0.98
4538--4605 21 3.0 22 87 10 86 76 4 0 19 0.95
4574--4606 15 2.2 15 100 0 66 81 0 0 18 0.68
4543--4606 7 8.5 8 74 20 50 79 3 0 17 0.85
5306--5341 18 2.0 18 100 0 72 27 11 16 44 1.82
5908--5953 21 2.2 20 96 3 83 23 15 21 39 1.92
6509--6534 13 2.0 13 100 0 52 23 15 7 53 1.67
7015--7059 21 2.1 21 83 0 54 44 4 13 37 1.64
12312--12344 16 2.1 16 100 0 66 39 18 0 42 1.50
28297--28335 19 2.1 19 100 0 78 25 20 15 38 1.92
32203--32256 25 2.2 25 100 0 108 46 9 7 37 1.64
34610--34664 27 2.0 27 89 10 85 41 5 7 45 1.55
37683--37707 12 2.1 12 100 0 50 24 8 0 68 1.16
39124--39165 16 2.5 17 88 7 52 38 11 9 40 1.75
39134--39165 16 2.0 16 100 0 64 37 12 6 43 1.68
49362--49410 24 2.3 21 83 16 57 44 8 8 38 1.64
49356--49403 24 2.0 24 100 0 96 45 8 8 37 1.64
52420--52450 15 2.1 15 93 0 53 38 12 22 25 1.90
60538--60584 23 2.0 23 100 0 94 31 12 0 55 1.38
60576--60628 17 3.5 17 69 30 57 52 0 3 43 1.19
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
60857--60919 21 3.0 21 100 0 126 33 28 4 33 1.78
65064--65096 16 2.1 16 100 0 66 33 0 18 48 1.48
69604--69655 17 3.1 17 97 0 95 34 17 0 48 1.48
69663--69727 14 4.7 14 78 1 51 60 0 7 32 1.25
69669--69723 10 5.3 10 82 8 74 61 0 7 30 1.23
69659--69723 22 3.0 21 78 13 71 61 0 7 30 1.24
73539--73563 11 2.3 11 100 0 50 76 0 8 16 1.02
87225--87262 20 1.9 20 100 0 76 34 7 10 47 1.67
87299--87324 13 2.0 13 100 0 52 30 15 23 30 1.95
91654--91684 15 2.1 15 100 0 62 19 32 0 48 1.49
93926--94009 24 3.6 24 87 9 138 14 22 11 51 1.75
93926--94017 45 2.1 45 93 2 159 13 23 10 52 1.71
96404--96481 15 4.7 17 70 15 65 34 7 24 33 1.84
96400--96475 24 3.2 24 98 0 143 35 7 22 34 1.83
104191--104250 6 11.0 6 81 16 53 31 16 0 51 1.45
104245--104291 16 3.1 16 90 6 71 29 12 0 57 1.36
104251--104294 7 6.0 7 84 10 61 29 13 0 56 1.38
105173--105209 14 2.6 14 95 0 65 32 13 0 54 1.40
125955--125997 22 2.0 22 85 0 59 18 20 4 55 1.60
128596--128671 19 3.9 20 77 14 70 71 0 1 27 0.95
128611--128675 26 2.8 22 76 15 67 76 0 1 21 0.86
128600--128671 10 7.6 9 74 13 56 72 0 1 26 0.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
128620--128678 18 3.3 18 79 9 59 79 0 1 18 0.81
131989--132033 23 2.0 23 86 8 65 40 0 0 60 0.97
132146--132176 14 2.2 14 100 0 62 22 6 0 70 1.09
145431--145467 14 2.6 14 95 0 65 54 0 13 32 1.40
146346--146389 7 6.0 7 84 10 61 56 0 13 29 1.38
146349--146395 16 3.1 16 90 6 71 57 0 12 29 1.36
146390--146449 6 11.0 6 81 16 53 51 0 16 31 1.45
154165--154240 24 3.2 24 98 0 143 34 22 7 35 1.83
156631--156714 24 3.6 24 87 9 138 51 11 22 14 1.75
156623--156714 45 2.1 44 93 2 157 52 10 23 13 1.71
158956--158986 15 2.1 15 100 0 62 48 0 32 19 1.49
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!