NC_034701.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034701.1 Althaea officinalis plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159987
Tables: 1
This is table 1 of 1 ( 76 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5144--5187 10 4.2 10 80 11 52 13 4 6 75 1.17
5282--5319 18 2.1 18 100 0 76 31 10 21 36 1.87
5368--5398 16 1.9 16 93 0 53 51 6 6 35 1.53
8718--8757 21 1.9 21 84 0 53 27 15 0 57 1.38
9050--9099 16 3.1 17 78 13 52 12 16 0 72 1.13
9120--9146 12 2.2 12 100 0 54 85 0 0 14 0.61
9112--9145 11 3.0 11 87 8 50 79 0 0 20 0.73
9116--9149 15 2.2 16 89 5 52 85 0 0 14 0.60
9621--9656 17 2.1 18 89 5 56 55 0 8 36 1.30
10549--10589 19 2.2 19 90 0 64 46 2 0 51 1.14
10558--10593 17 2.1 17 90 10 56 44 5 0 50 1.25
10547--10607 27 2.2 28 79 2 70 40 6 0 52 1.27
28020--28056 18 2.1 18 90 10 58 67 2 0 29 1.04
28034--28060 11 2.5 11 100 0 54 62 0 0 37 0.95
33557--33587 15 2.1 15 93 0 53 41 0 0 58 0.98
37849--37912 33 1.9 33 90 6 103 40 6 0 53 1.26
37874--37915 20 2.1 20 100 0 84 40 4 0 54 1.21
37861--37892 13 2.5 13 100 0 64 43 6 0 50 1.27
37915--37951 18 2.1 18 100 0 74 62 5 5 27 1.39
37964--37997 13 2.5 13 90 4 50 64 0 0 35 0.94
37975--38032 17 3.5 17 68 15 50 62 0 3 34 1.12
38064--38093 8 3.8 8 90 0 51 50 0 0 50 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
38120--38167 10 4.8 10 82 10 53 60 4 2 33 1.27
38116--38170 10 5.6 10 79 10 51 60 3 1 34 1.25
44558--44592 17 2.1 17 100 0 70 71 5 5 17 1.25
46456--46490 16 2.2 16 89 0 52 68 0 5 25 1.11
46872--46908 17 2.2 17 100 0 74 40 18 10 29 1.85
48095--48198 22 4.6 23 68 19 67 56 0 2 39 1.21
48100--48173 9 8.4 9 76 15 75 58 0 2 39 1.13
48552--48590 20 1.9 21 84 5 53 35 12 5 46 1.65
48852--48892 14 2.9 14 88 3 55 39 2 0 58 1.11
48921--48981 11 6.5 10 71 25 53 49 0 4 45 1.23
48921--48976 17 3.2 17 80 19 62 50 0 5 44 1.25
49301--49342 21 2.0 21 100 0 84 38 9 9 42 1.70
49402--49436 16 2.2 16 100 0 70 25 5 11 57 1.56
50315--50349 17 2.1 17 94 0 61 57 2 5 34 1.37
51148--51197 20 2.5 20 75 9 57 12 10 2 76 1.11
51229--51277 23 2.1 23 92 0 80 57 0 16 26 1.40
51376--51411 17 2.1 17 100 0 72 63 0 5 30 1.17
53809--53845 15 2.5 15 91 4 58 45 10 2 40 1.53
54139--54176 15 2.5 15 95 4 67 68 0 7 23 1.16
57936--57974 20 1.9 19 85 10 51 23 10 0 66 1.22
62337--62370 17 2.0 17 100 0 68 35 5 11 47 1.65
63804--63844 20 2.0 20 100 0 82 56 4 4 34 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63974--64001 14 2.0 14 100 0 56 64 14 7 14 1.48
66971--67006 18 2.0 18 100 0 72 50 0 16 33 1.46
70528--70571 15 3.1 15 90 6 65 36 6 6 50 1.56
70995--71038 17 2.6 17 82 7 54 31 6 2 59 1.36
71025--71094 21 3.2 20 71 15 59 35 4 0 60 1.17
71094--71140 18 2.8 17 84 12 62 68 8 0 23 1.17
71109--71140 15 2.1 15 94 0 55 71 9 0 18 1.12
80217--80262 21 2.2 21 96 3 85 13 15 0 71 1.14
85727--85773 15 3.5 13 86 13 69 59 2 0 38 1.09
85728--85809 28 2.9 29 78 8 89 54 1 1 42 1.15
92819--92887 21 3.3 21 87 2 95 11 24 8 55 1.64
95253--95342 18 5.2 18 90 4 132 30 8 25 35 1.86
95265--95341 9 8.6 9 72 0 55 29 10 27 32 1.90
98316--98365 20 2.5 20 84 15 75 46 4 4 46 1.40
98313--98380 24 3.0 24 76 22 67 47 2 2 47 1.32
98351--98379 14 2.1 14 100 0 58 51 0 0 48 1.00
103625--103652 14 2.0 14 100 0 56 14 14 0 71 1.15
103657--103682 13 2.0 13 100 0 52 30 0 15 53 1.42
111835--111896 32 1.9 32 96 0 115 38 22 9 29 1.86
119280--119315 18 2.0 18 100 0 72 38 16 5 38 1.72
136132--136193 32 1.9 32 96 0 115 29 9 22 38 1.86
144346--144371 13 2.0 13 100 0 52 53 15 0 30 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144376--144403 14 2.0 14 100 0 56 71 0 14 14 1.15
149649--149677 14 2.1 14 100 0 58 48 0 0 51 1.00
149663--149714 20 2.5 22 84 15 83 46 3 3 46 1.39
149648--149715 24 3.0 24 74 24 67 47 2 2 47 1.32
152686--152763 18 4.3 18 93 0 129 33 26 10 29 1.89
152686--152775 36 2.6 36 87 5 132 35 25 8 30 1.86
152686--152762 9 8.6 9 72 0 55 33 27 9 29 1.88
152686--152775 18 5.2 17 90 4 103 35 25 8 30 1.86
155141--155229 21 4.1 21 84 5 90 53 10 23 12 1.68
155141--155209 21 3.3 21 87 2 95 55 8 24 11 1.64
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Tables: 1
The End!