NC_034703.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034703.1 Illicium anisatum plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 142723
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
921--950 14 2.1 14 100 0 60 20 23 6 50 1.71
10009--10034 13 2.0 13 100 0 52 53 7 15 23 1.67
10062--10095 17 2.0 17 100 0 68 47 0 23 29 1.52
16175--16208 9 3.7 9 84 7 50 32 14 8 44 1.76
28743--28807 20 3.2 20 89 4 94 41 3 15 40 1.63
28746--28811 21 3.2 21 91 2 98 42 3 18 36 1.66
33242--33290 25 2.0 25 83 0 62 42 0 0 57 0.99
33253--33279 13 2.1 13 100 0 54 40 0 0 59 0.98
33439--33478 20 2.0 20 85 4 55 12 22 0 65 1.26
35190--35248 2 30.0 2 82 3 75 44 0 0 55 0.99
38633--38674 21 2.0 21 100 0 84 38 9 19 33 1.84
38633--38682 21 2.2 23 86 13 68 36 14 18 32 1.90
48254--48283 15 2.0 15 93 0 51 33 36 3 26 1.73
49630--49662 13 2.7 13 90 9 52 42 6 0 51 1.26
59912--59969 28 2.1 28 100 0 116 41 10 13 34 1.79
60656--60686 12 2.6 12 94 0 53 32 6 22 38 1.80
62153--62184 15 2.1 15 94 0 55 43 6 9 40 1.62
65122--65151 15 2.0 15 100 0 60 26 6 13 53 1.64
71276--71319 21 2.1 21 91 0 70 31 20 13 34 1.92
82550--82598 24 2.0 24 96 0 89 32 30 8 28 1.86
85072--85109 16 2.5 15 87 8 58 42 7 7 42 1.63
85080--85111 16 2.0 16 100 0 64 43 12 6 37 1.68
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
91763--91852 18 5.0 18 100 0 180 50 0 22 27 1.50
92243--92288 21 2.2 21 84 3 58 13 26 4 56 1.55
109880--109920 21 2.0 21 85 9 57 51 2 7 39 1.43
110857--110890 16 2.1 17 94 5 61 55 5 11 26 1.58
119390--119425 18 2.0 18 100 0 72 16 16 0 66 1.25
125758--125796 15 2.6 15 91 0 60 5 23 2 69 1.21
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Tables: 1
The End!