NC_034777.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034777.1 Asparagus officinalis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156699
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8412--8464 20 2.5 21 87 9 65 41 5 0 52 1.25
8420--8462 20 2.2 19 88 8 68 39 6 0 53 1.28
8427--8464 20 1.9 20 100 0 76 42 7 0 50 1.31
8501--8534 16 2.2 15 89 5 50 82 0 5 11 0.83
8485--8536 27 2.0 27 81 11 63 78 0 5 15 0.92
8498--8543 17 2.8 17 75 15 51 78 0 8 13 0.97
13077--13102 13 2.0 13 100 0 52 53 7 15 23 1.67
36290--36319 14 2.1 14 100 0 60 20 6 23 50 1.71
46833--46898 27 2.4 28 82 12 82 53 3 0 43 1.16
46846--46898 14 3.9 14 76 16 58 50 1 0 47 1.12
47057--47081 12 2.1 12 100 0 50 48 0 0 52 1.00
47136--47170 17 2.1 17 100 0 70 37 11 5 45 1.64
51322--51365 18 2.4 19 88 7 72 40 0 2 56 1.11
58743--58788 21 2.2 21 100 0 92 39 0 13 47 1.42
80489--80537 24 2.0 24 88 0 71 30 32 10 26 1.89
83340--83365 13 2.0 13 100 0 52 53 7 0 38 1.30
87656--87707 23 2.3 23 96 3 97 46 7 21 25 1.77
90301--90349 21 2.3 21 96 0 89 12 28 8 51 1.68
92698--92743 24 1.9 24 95 0 83 34 8 19 36 1.83
114543--114572 15 2.0 15 100 0 60 40 0 0 60 0.97
114608--114644 18 2.0 19 89 5 58 54 2 10 32 1.49
122886--122915 15 2.0 15 100 0 60 60 0 13 26 1.34
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129039--129088 15 3.3 15 94 0 82 32 14 12 42 1.82
148956--149001 24 1.9 24 95 0 83 36 19 8 34 1.83
151350--151398 21 2.3 21 96 0 89 51 8 28 12 1.68
151350--151418 21 3.1 21 87 6 75 52 10 24 13 1.71
153992--154043 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!