NC_034806.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034806.1 Torreya grandis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 136949
Tables: 1
This is table 1 of 1 ( 52 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1170--1202 14 2.4 14 100 0 66 30 12 6 51 1.63
7754--7789 17 2.1 17 100 0 72 33 22 11 33 1.89
18484--18515 16 2.0 16 100 0 64 37 25 6 31 1.81
25181--25217 17 2.1 18 90 5 58 35 10 10 43 1.75
33522--33583 17 3.6 17 93 0 106 54 1 24 19 1.53
37390--37437 15 3.2 15 74 11 53 75 8 8 8 1.21
37381--37437 30 1.9 30 96 0 105 73 7 8 10 1.24
41649--41681 2 17.0 2 90 6 50 45 0 0 54 0.99
41654--41685 15 2.1 15 100 0 64 40 0 0 59 0.97
57656--57685 12 2.5 12 100 0 60 56 6 36 0 1.26
57503--57862 177 2.0 177 96 0 657 42 11 21 24 1.86
57833--57898 12 5.5 12 100 0 132 53 7 39 0 1.30
57829--57908 24 3.3 24 91 0 115 52 10 36 1 1.43
60339--60461 35 3.5 35 96 0 219 52 21 3 22 1.61
61418--61512 19 5.0 19 97 0 172 58 20 6 14 1.57
61506--61538 13 2.7 12 90 9 57 54 0 9 36 1.32
63660--63841 30 6.1 30 94 0 319 29 9 21 38 1.86
72192--72218 11 2.5 11 100 0 54 37 0 14 48 1.45
79798--79889 24 3.7 24 88 4 112 23 14 13 48 1.78
79822--79889 24 2.8 24 95 4 120 25 13 11 50 1.75
79923--79990 14 5.1 14 78 7 70 45 7 5 41 1.56
80591--80645 27 2.0 28 92 3 94 36 12 9 41 1.75
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
84727--84778 18 3.0 17 83 10 70 5 13 7 73 1.24
88716--88771 12 4.7 12 97 0 94 55 10 16 17 1.69
88750--88957 84 2.5 84 99 0 407 46 11 19 22 1.81
89024--89149 15 8.4 15 99 0 243 60 12 21 5 1.53
89046--89169 15 7.8 19 95 4 73 57 14 19 8 1.63
89209--89268 30 2.0 30 100 0 120 33 13 10 43 1.77
95345--95381 19 2.1 18 90 10 58 56 10 5 27 1.55
103351--103509 23 6.9 23 99 0 309 17 13 8 61 1.56
105247--105279 16 2.1 16 100 0 66 39 18 18 24 1.92
109248--109293 19 2.4 19 92 0 74 43 21 2 32 1.65
109257--109294 19 2.0 19 100 0 76 47 21 0 31 1.51
110661--110723 32 2.0 32 93 3 110 30 14 11 44 1.79
111349--111374 12 2.2 12 100 0 52 57 0 7 34 1.27
120904--120986 41 2.0 41 100 0 166 25 19 12 43 1.85
126861--126912 12 4.3 12 100 0 104 7 17 7 67 1.39
127372--127459 24 3.9 21 73 15 61 3 20 4 71 1.18
127672--127761 27 3.3 27 98 0 171 21 22 17 38 1.93
127942--128000 27 2.2 27 81 6 66 38 27 13 20 1.90
128018--128059 21 2.0 21 95 0 75 0 16 19 64 1.30
128915--129092 21 8.5 21 92 0 257 26 18 19 35 1.94
128995--129137 21 6.6 22 76 11 86 29 15 18 36 1.92
129909--129944 12 3.2 12 77 22 51 8 30 8 52 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129888--129945 18 2.9 21 80 15 77 10 27 10 51 1.68
129891--129933 9 4.8 9 76 0 50 11 27 11 48 1.74
131404--131559 15 10.4 14 88 9 172 0 28 4 66 1.11
131430--131559 45 2.8 45 90 6 217 0 28 5 66 1.14
132414--132452 19 2.1 19 100 0 78 15 5 0 79 0.90
132416--132455 9 4.2 10 84 9 57 17 5 0 77 0.94
132410--132455 23 2.0 23 86 4 65 15 4 0 80 0.86
136264--136289 13 2.0 13 100 0 52 46 15 7 30 1.74
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Tables: 1
The End!