NC_034908.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_034908.1 Schisandra chinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 146859
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6780--6805 13 2.0 13 100 0 52 38 7 23 30 1.83
9849--9890 11 3.8 11 81 9 50 16 2 2 78 0.96
24936--24964 14 2.0 15 93 6 51 27 13 17 41 1.87
30068--30098 15 2.1 15 100 0 62 35 6 25 32 1.82
32325--32356 9 3.6 9 100 0 64 43 0 21 34 1.53
33194--33224 11 2.8 11 95 0 53 29 22 12 35 1.91
47456--47514 6 9.8 6 100 0 118 32 0 16 50 1.46
47600--47625 13 2.0 13 100 0 52 23 7 15 53 1.67
48820--48850 12 2.6 12 94 0 53 29 16 0 54 1.42
59476--59534 19 3.1 19 97 0 109 28 23 10 37 1.88
60699--60724 12 2.2 12 100 0 52 50 7 0 42 1.31
61549--61582 15 2.3 15 94 0 59 44 8 5 41 1.60
68654--68687 17 2.0 17 100 0 68 52 17 23 5 1.66
69774--69804 15 2.0 16 93 6 55 25 9 0 64 1.24
70277--70318 21 2.0 21 90 0 66 33 21 11 33 1.90
81488--81536 24 2.0 24 92 0 80 30 30 10 28 1.90
93470--93612 24 6.2 24 85 9 208 33 4 30 31 1.79
93481--93616 42 3.1 42 81 12 182 33 5 30 30 1.81
93469--93598 66 2.0 66 93 0 224 33 5 29 32 1.80
93505--93550 18 2.6 18 85 0 56 32 8 30 28 1.87
94887--94958 15 4.8 15 100 0 144 47 0 27 25 1.52
95944--95973 14 2.1 14 93 0 51 40 20 10 30 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
100462--100495 13 2.6 13 95 0 59 26 8 0 64 1.22
110682--110747 18 3.4 18 69 25 53 36 13 21 28 1.91
111432--111466 18 1.9 18 94 0 61 45 8 14 31 1.75
131061--131095 18 1.9 18 94 0 61 31 14 8 45 1.75
131780--131845 18 3.4 18 69 25 53 28 21 13 36 1.91
142032--142065 13 2.6 13 95 0 59 64 0 8 26 1.22
146554--146583 14 2.1 14 93 0 51 30 10 20 40 1.85
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Tables: 1
The End!