NC_035034.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035034.1 Chrysopogon zizanioides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 139971
Tables: 1
This is table 1 of 1 ( 43 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
13203--13227 12 2.1 12 100 0 50 36 16 16 32 1.90
15351--15399 25 2.0 25 95 0 89 44 8 4 42 1.53
15351--15397 13 3.7 13 82 5 60 44 8 4 42 1.54
15453--15584 67 2.0 67 89 0 201 31 16 24 28 1.96
18044--18072 14 2.0 15 93 6 51 75 0 17 6 1.01
18225--18256 16 2.0 16 100 0 64 18 12 6 62 1.50
19008--19045 19 2.0 19 100 0 76 21 21 5 52 1.66
19935--19983 14 3.5 13 81 13 53 51 4 0 44 1.20
19943--19989 23 2.0 23 100 0 94 46 4 0 48 1.21
26300--26340 21 2.0 21 100 0 82 26 29 14 29 1.95
27193--27221 15 1.9 15 100 0 58 27 34 17 20 1.95
28266--28328 21 3.0 21 88 0 90 39 14 33 12 1.84
28386--28476 21 4.3 21 76 5 94 41 15 23 19 1.89
28380--28476 42 2.3 42 87 3 133 41 14 25 18 1.89
28399--28488 21 4.3 21 75 10 85 40 15 25 18 1.90
28570--28652 33 2.5 32 79 11 96 40 10 32 15 1.82
28636--28670 12 2.9 12 100 0 70 42 17 31 8 1.79
31011--31040 11 2.7 11 100 0 60 30 0 6 63 1.20
34089--34135 8 5.8 9 74 23 50 31 0 0 68 0.90
34090--34137 15 3.1 16 87 6 71 33 0 0 66 0.92
34379--34406 14 2.0 14 100 0 56 57 7 7 28 1.52
37964--38004 20 2.0 20 100 0 82 48 9 9 31 1.69
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49021--49062 15 2.8 15 96 0 75 9 4 0 85 0.72
49369--49434 33 2.0 33 100 0 132 39 6 18 36 1.75
52000--52052 27 2.0 27 100 0 106 52 7 9 30 1.61
56070--56100 15 2.1 15 100 0 62 19 32 6 41 1.77
58296--58335 20 2.0 20 100 0 80 20 30 5 45 1.72
63948--63992 22 2.0 22 100 0 90 20 17 13 48 1.80
67089--67213 21 6.0 21 82 3 162 38 25 5 30 1.79
67093--67213 42 2.9 42 87 0 179 38 25 5 29 1.79
67089--67210 63 1.9 63 90 3 192 38 26 4 30 1.77
67501--67559 21 2.8 21 80 10 75 49 20 10 20 1.77
69853--69899 17 2.7 17 86 3 58 46 8 8 36 1.65
69870--69903 17 2.0 17 100 0 68 52 5 11 29 1.61
72036--72079 22 1.9 23 86 9 63 52 2 18 27 1.57
77925--77964 18 2.2 18 86 0 53 2 20 7 70 1.24
77937--77977 18 2.3 18 86 0 55 9 14 2 73 1.19
93495--93527 14 2.4 14 94 0 57 27 15 3 54 1.55
93521--93564 21 2.1 21 100 0 88 34 4 9 52 1.54
107589--107626 10 3.7 10 86 6 58 26 15 10 47 1.78
107584--107625 21 2.0 21 100 0 84 28 14 9 47 1.75
128362--128405 21 2.1 21 100 0 88 52 9 4 34 1.54
128399--128431 14 2.4 14 94 0 57 54 3 15 27 1.55
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Tables: 1
The End!