NC_035068.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035068.1 Juniperus communis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 128334
Tables: 1
This is table 1 of 1 ( 81 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1312--1341 15 2.0 15 100 0 60 26 6 20 46 1.75
4553--4612 25 2.4 24 83 10 68 65 3 11 20 1.39
11786--11852 18 3.6 18 72 18 55 46 1 5 46 1.36
17782--17821 21 1.9 21 100 0 80 40 5 7 47 1.54
19635--19674 20 2.0 20 90 0 62 32 20 10 37 1.85
25179--25217 3 13.0 3 83 0 51 0 41 0 58 0.98
25179--25217 12 3.2 12 100 0 78 0 41 0 58 0.98
40913--40956 20 2.2 20 87 0 61 34 9 13 43 1.76
43757--43790 17 2.0 17 100 0 68 41 0 17 41 1.50
43806--43836 14 2.3 13 94 5 53 41 6 0 51 1.27
48127--48152 13 2.0 13 100 0 52 46 15 7 30 1.74
52034--52075 21 2.0 21 100 0 84 23 9 38 28 1.86
61044--61090 24 2.0 24 95 4 87 29 17 25 27 1.97
62260--62445 33 5.8 33 81 8 206 48 19 12 19 1.80
62260--62455 63 3.1 62 79 10 193 48 18 12 19 1.79
62260--62455 96 2.0 96 99 0 383 48 18 12 19 1.79
62491--62650 54 3.0 54 65 17 141 39 10 11 38 1.76
62439--62650 108 2.0 108 99 0 415 41 9 12 37 1.75
62627--62685 21 2.8 21 100 0 118 25 16 10 47 1.78
62769--62804 18 2.0 18 100 0 72 38 5 16 38 1.72
62971--63002 15 2.1 15 94 0 55 18 6 9 65 1.42
65098--65130 16 2.1 16 100 0 66 24 12 6 57 1.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
65133--65159 14 1.9 14 100 0 54 33 0 7 59 1.25
66099--66128 15 2.0 15 100 0 60 46 0 13 40 1.43
66273--66326 16 3.4 16 78 14 58 51 5 3 38 1.43
67086--67123 19 2.0 19 100 0 76 31 15 10 42 1.81
68542--68575 18 2.0 18 88 11 54 8 17 20 52 1.71
72683--72723 21 2.0 21 90 0 64 46 12 9 31 1.74
72704--72801 39 2.5 39 96 0 178 46 8 13 31 1.72
72783--72822 21 1.9 21 89 0 62 42 12 10 35 1.76
72791--72873 39 2.1 40 84 6 116 45 7 15 31 1.73
72681--72876 99 2.0 99 95 0 356 47 7 13 31 1.71
72744--72861 60 2.0 60 98 0 227 45 8 13 32 1.74
72804--72892 39 2.5 36 85 10 112 46 6 13 33 1.70
72838--72914 33 2.3 33 84 4 93 45 7 14 32 1.73
72843--73033 87 2.2 87 98 0 364 39 8 14 37 1.78
72993--73073 21 3.7 21 76 9 90 30 13 12 43 1.81
73165--73219 21 2.6 21 80 5 58 36 14 14 34 1.87
74884--74992 24 4.5 24 87 0 128 38 17 9 34 1.82
74884--75000 48 2.4 48 85 0 144 37 17 8 35 1.81
78485--78674 81 2.3 81 98 1 364 33 5 17 43 1.73
78621--78780 53 3.0 53 100 0 320 33 5 22 38 1.78
79150--79478 116 2.9 116 95 3 591 37 13 19 28 1.90
81026--81088 21 3.0 21 90 4 101 41 23 12 22 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
82033--82070 15 2.5 16 87 8 53 52 13 18 15 1.74
82910--82950 21 2.0 21 85 0 55 43 4 39 12 1.63
82974--83046 24 3.0 24 95 0 128 54 13 15 16 1.71
84921--84970 24 2.1 24 92 0 82 54 10 28 8 1.62
86149--86247 45 2.2 45 89 3 146 28 13 21 37 1.91
86149--86272 45 2.8 45 85 2 115 28 14 19 37 1.91
86359--86406 24 2.0 24 95 0 87 50 8 27 14 1.71
86457--86523 21 3.2 21 100 0 134 49 13 10 26 1.74
86608--86649 21 2.0 21 100 0 84 47 14 14 23 1.80
88293--88383 24 3.9 24 85 8 134 30 25 9 34 1.88
88364--88490 39 3.3 39 100 0 254 25 25 10 38 1.87
89128--89152 1 25.0 1 100 0 50 0 0 0 100 0.00
89149--89268 18 6.5 18 93 5 204 6 12 25 55 1.60
89160--89356 18 10.8 18 92 4 161 6 12 21 58 1.57
89233--89356 36 3.3 36 90 4 185 7 13 17 61 1.54
89179--89356 54 3.2 56 85 9 199 6 12 20 59 1.56
89328--89383 27 2.1 27 93 0 94 7 12 19 60 1.55
89332--89396 27 2.4 27 84 5 78 6 20 13 60 1.55
89380--89503 9 14.1 9 86 8 148 0 37 0 61 1.02
89507--89543 18 2.1 18 94 0 65 27 32 24 16 1.96
89573--89612 12 3.2 12 96 3 71 32 22 0 45 1.53
89604--89654 19 2.7 19 100 0 102 35 11 0 52 1.38
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
89573--89612 4 9.8 4 83 5 53 32 22 0 45 1.53
92049--92141 36 2.6 36 87 0 150 30 19 4 46 1.69
92047--92141 18 5.3 18 90 0 118 30 20 4 45 1.70
99199--99242 22 2.0 22 100 0 88 50 9 9 31 1.65
106306--106370 24 2.6 24 83 13 87 23 15 7 53 1.67
106418--106496 26 3.0 26 100 0 158 49 11 3 35 1.57
110870--110918 24 2.0 23 85 14 64 4 6 6 83 0.90
110895--110929 18 1.9 18 88 0 52 5 14 8 71 1.29
113876--113944 36 1.9 36 100 0 138 44 0 23 31 1.53
114830--114897 18 3.8 18 100 0 136 26 29 4 39 1.75
114830--114894 9 7.2 9 78 0 76 27 27 4 40 1.76
115804--115852 6 8.2 6 86 8 57 48 18 0 32 1.48
115804--115855 18 2.9 18 76 21 63 48 19 0 32 1.49
115845--115900 27 2.1 27 96 0 103 53 14 12 19 1.72
116834--116956 30 4.1 30 98 0 237 20 26 6 47 1.74
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Tables: 1
The End!