NC_035239.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035239.1 Mangifera indica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157780
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3614--3655 20 2.1 20 95 0 75 38 9 21 30 1.85
4634--4664 15 2.1 15 93 0 53 54 12 9 22 1.67
5026--5071 23 2.0 23 100 0 92 30 13 0 56 1.37
9427--9460 11 3.1 11 95 0 59 11 8 20 58 1.59
14258--14296 21 1.9 20 84 5 51 33 2 0 64 1.08
30144--30205 23 2.7 23 80 9 74 41 0 3 54 1.16
31676--31703 14 2.0 14 100 0 56 35 21 14 28 1.92
33521--33550 15 2.0 15 93 0 51 56 3 6 33 1.42
43458--43503 14 3.2 14 93 3 74 30 17 6 45 1.73
43463--43505 14 3.1 14 96 0 77 30 18 6 44 1.76
49967--50008 21 2.0 21 100 0 84 38 14 14 33 1.86
50659--50710 26 2.0 26 96 0 95 51 9 11 26 1.68
54849--54873 13 1.9 13 100 0 50 32 24 12 32 1.91
59484--59516 12 2.5 13 85 14 50 54 15 3 27 1.55
59713--59746 10 3.4 10 100 0 68 29 0 8 61 1.26
61634--61660 13 2.1 13 100 0 54 22 7 14 55 1.64
61982--62011 13 2.3 13 100 0 60 40 6 6 46 1.56
67727--67753 13 2.1 13 100 0 54 85 0 7 7 0.75
67717--67749 16 1.9 17 88 11 50 81 6 6 6 0.97
69848--69880 16 2.1 16 94 0 57 39 3 24 33 1.71
70394--70423 15 2.0 15 100 0 60 40 6 0 53 1.27
70479--70517 21 1.9 21 94 5 71 30 25 10 33 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
91383--91436 24 2.2 25 90 3 83 11 24 7 57 1.58
93783--93875 18 5.2 18 96 0 168 30 9 25 34 1.88
101618--101651 16 2.1 17 94 5 61 5 8 0 85 0.75
106695--106766 38 1.9 37 94 2 126 31 22 25 20 1.98
113740--113776 18 2.1 18 89 0 56 24 8 8 59 1.53
117463--117500 20 2.0 20 85 15 53 21 13 13 52 1.73
137688--137759 38 1.9 37 94 2 126 20 25 22 31 1.98
142803--142836 16 2.1 17 94 5 61 85 0 8 5 0.75
150579--150671 18 5.2 18 96 0 168 34 25 9 30 1.88
153018--153071 24 2.2 25 90 3 83 57 7 24 11 1.58
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Tables: 1
The End!