NC_035240.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035240.1 Punica granatum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158633
Tables: 1
This is table 1 of 1 ( 46 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4532--4576 22 2.0 22 91 4 72 44 24 4 26 1.72
9118--9150 16 2.1 16 100 0 66 30 6 0 63 1.18
9118--9168 16 2.9 17 88 8 59 31 5 3 58 1.40
9123--9175 19 2.9 19 79 17 60 32 5 5 56 1.46
9173--9201 15 1.9 15 100 0 58 44 13 0 41 1.44
10819--10857 20 2.0 20 94 0 69 41 7 7 43 1.62
29750--29775 13 2.0 13 100 0 52 23 30 0 46 1.53
33318--33349 16 2.0 16 100 0 64 43 0 6 50 1.27
33322--33379 30 1.9 31 82 3 73 43 0 6 50 1.29
33396--33443 26 1.9 25 87 8 71 54 2 4 39 1.32
34320--34352 16 2.1 16 100 0 66 30 6 6 57 1.47
35065--35093 15 2.0 15 93 6 51 68 0 13 17 1.20
39022--39071 5 10.4 5 74 8 50 54 0 6 40 1.25
39021--39059 18 2.2 17 86 13 53 51 0 5 43 1.24
39008--39069 28 2.3 27 86 5 81 53 0 6 40 1.27
44897--44937 12 3.2 12 87 12 64 31 17 7 43 1.76
44903--44932 14 2.1 14 100 0 60 26 23 6 43 1.78
45860--45887 13 2.2 13 100 0 56 39 14 0 46 1.44
58888--58913 13 2.0 13 100 0 52 38 0 15 46 1.46
60831--60862 15 2.1 15 100 0 64 43 18 0 37 1.51
63112--63136 11 2.3 11 100 0 50 72 0 8 20 1.10
63222--63251 15 2.0 15 93 0 51 33 13 3 50 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67602--67632 16 1.9 16 93 0 53 35 12 9 41 1.76
70948--70978 15 2.1 15 93 0 53 54 3 9 32 1.49
71262--71322 14 4.6 14 82 10 67 40 6 3 49 1.45
71262--71317 26 2.2 26 77 3 60 41 7 3 48 1.48
71262--71331 28 2.7 26 77 6 70 42 5 4 47 1.47
72652--72683 14 2.2 15 94 5 57 75 3 0 21 0.95
72760--72798 21 1.9 21 94 5 71 30 23 10 35 1.88
76384--76411 14 2.0 14 100 0 56 28 7 7 57 1.52
85368--85416 16 3.1 15 80 13 53 22 0 2 75 0.90
85351--85416 21 3.2 20 83 10 80 22 1 3 72 1.06
93174--93239 21 3.2 21 82 2 80 12 22 7 57 1.60
95599--95711 18 6.3 18 96 0 199 32 5 31 30 1.80
103053--103077 12 2.1 12 100 0 50 8 8 0 84 0.79
103567--103604 18 2.1 18 90 0 58 26 7 5 60 1.46
103564--103610 23 2.0 23 84 8 60 25 8 6 59 1.50
117120--117155 18 2.0 18 100 0 72 38 5 11 44 1.63
118694--118737 22 2.0 22 100 0 88 36 13 9 40 1.76
131911--131969 15 4.2 14 75 20 52 3 20 3 72 1.13
144047--144084 18 2.1 18 90 0 58 60 5 7 26 1.46
144041--144087 23 2.0 23 84 8 60 59 6 8 25 1.50
144574--144598 12 2.1 12 100 0 50 84 0 8 8 0.79
151943--152045 9 11.4 9 76 0 107 27 33 5 33 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
151940--152052 18 6.3 18 96 0 199 30 31 5 32 1.80
154411--154500 21 4.1 21 81 4 81 55 10 22 12 1.66
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Tables: 1
The End!