NC_035342.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035342.1 Dendrobium fimbriatum chloroplast DNA, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151673
Tables: 1
This is table 1 of 1 ( 57 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3361--3414 19 2.9 19 83 2 65 44 7 1 46 1.42
6260--6302 16 2.6 16 82 17 61 53 16 0 30 1.43
6405--6442 18 2.1 18 100 0 76 28 10 10 50 1.70
6655--6691 6 6.0 6 93 6 65 18 48 0 32 1.49
6653--6693 19 2.2 19 100 0 82 21 46 0 31 1.52
7832--7857 13 2.0 13 100 0 52 46 7 7 38 1.61
15534--15558 12 2.1 12 100 0 50 48 0 16 36 1.46
29085--29115 13 2.4 13 94 0 53 22 9 6 61 1.50
31521--31595 29 2.6 29 80 14 93 45 10 5 38 1.62
32838--32928 45 2.0 45 100 0 182 58 6 13 21 1.58
46585--46614 15 2.0 15 100 0 60 46 6 6 40 1.56
46686--46754 26 2.6 28 82 15 85 47 7 1 43 1.39
46700--46744 15 3.3 15 73 20 53 48 6 0 44 1.29
46700--46759 17 3.6 17 78 13 63 48 5 1 45 1.34
46721--46762 13 3.1 14 83 16 54 50 2 4 42 1.36
47640--47674 15 2.3 15 95 0 61 17 11 0 71 1.14
49623--49648 13 2.0 13 100 0 52 53 7 15 23 1.67
49782--49812 15 2.1 15 100 0 62 41 0 12 45 1.42
50013--50050 19 2.0 19 100 0 76 26 21 21 31 1.98
55935--55968 14 2.4 14 100 0 68 44 20 0 35 1.52
58828--58864 19 1.9 19 89 10 58 48 2 2 45 1.30
64866--64925 25 2.4 25 100 0 120 35 11 6 46 1.67
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67718--67747 15 2.0 15 93 0 51 63 13 16 6 1.50
67754--67797 21 2.1 21 86 0 61 34 25 9 31 1.87
68840--68870 15 2.1 15 100 0 62 9 19 0 70 1.14
72053--72091 19 2.0 20 85 5 53 15 12 0 71 1.14
74336--74364 11 2.6 11 100 0 58 10 17 0 72 1.11
74438--74474 14 2.6 14 100 0 74 64 0 13 21 1.27
80021--80069 24 2.0 24 84 0 62 30 22 10 36 1.87
82994--83020 13 2.1 13 100 0 54 14 22 0 62 1.31
83077--83110 11 2.9 12 86 8 52 8 17 5 67 1.37
86047--86102 24 2.3 24 96 0 103 37 7 25 30 1.82
90036--90071 18 2.0 18 100 0 72 50 11 11 27 1.72
92629--92700 18 3.8 18 76 23 69 33 5 25 36 1.79
92636--92688 24 2.2 24 100 0 106 33 7 24 33 1.84
92642--92704 9 7.3 9 74 13 53 33 4 26 34 1.78
92636--92701 24 2.8 24 90 4 89 33 6 25 34 1.81
100412--100485 18 3.9 19 74 13 55 8 13 6 71 1.29
100448--100487 17 2.4 17 87 4 55 7 17 7 67 1.38
100961--100987 14 1.9 14 100 0 54 18 14 0 66 1.25
100991--101024 11 3.1 11 91 0 50 23 14 0 61 1.33
101006--101052 14 3.6 13 81 18 62 29 14 0 55 1.40
100997--101044 11 4.1 11 80 15 51 29 12 0 58 1.35
111575--111613 18 2.2 18 100 0 78 48 5 25 20 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112153--112191 13 2.9 13 85 14 53 51 2 7 38 1.44
112912--112997 20 4.4 19 71 20 52 19 8 6 65 1.43
120059--120084 13 2.0 13 100 0 52 46 15 7 30 1.74
135385--135429 14 3.4 14 85 11 60 55 0 13 31 1.38
135367--135447 11 6.3 14 68 23 54 55 1 13 29 1.46
135450--135476 14 1.9 14 100 0 54 66 0 14 18 1.25
135950--135989 17 2.4 17 87 4 55 67 7 17 7 1.38
135979--136025 20 2.4 20 82 3 60 76 4 12 6 1.12
143733--143795 9 7.3 9 74 13 53 34 26 4 33 1.78
143745--143801 24 2.4 24 96 0 96 35 24 7 33 1.82
143737--143772 18 2.0 18 100 0 72 33 27 5 33 1.80
146366--146401 18 2.0 18 100 0 72 27 11 11 50 1.72
150335--150390 24 2.3 24 96 0 103 30 25 7 37 1.82
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Tables: 1
The End!