NC_035506.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035506.1 Aloe vera voucher Aloe vera chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152875
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
13176--13201 12 2.2 12 100 0 52 76 0 15 7 0.99
27643--27678 17 2.1 17 100 0 72 50 0 22 27 1.50
42398--42428 15 2.1 15 100 0 62 35 19 6 38 1.77
50379--50433 25 2.2 26 87 9 78 30 12 9 47 1.73
54076--54130 2 28.0 2 83 10 69 43 0 1 54 1.10
54075--54151 31 2.5 30 83 8 84 40 1 3 54 1.27
54076--54151 35 2.2 35 86 4 102 40 1 3 53 1.27
58616--58645 15 2.0 15 100 0 60 46 6 6 40 1.56
64603--64641 17 2.2 18 86 4 53 17 5 12 64 1.46
67365--67408 21 2.1 21 91 0 70 31 25 11 31 1.91
68489--68529 4 10.5 4 92 5 66 78 0 0 21 0.76
74840--74864 12 2.1 12 100 0 50 76 24 0 0 0.80
77484--77509 13 2.0 13 100 0 52 46 7 7 38 1.61
83956--83989 17 2.0 17 100 0 68 52 5 11 29 1.61
86212--86263 23 2.3 23 96 3 97 46 7 21 25 1.77
88864--88932 21 3.3 21 97 0 129 13 30 8 47 1.72
108698--108763 18 3.4 18 67 25 53 34 12 22 30 1.91
125658--125690 15 2.2 15 100 0 66 33 12 15 39 1.84
127617--127682 18 3.4 18 67 25 53 30 22 12 34 1.91
147448--147516 21 3.3 21 97 0 129 47 8 30 13 1.72
147448--147537 21 4.1 21 92 4 126 48 10 27 13 1.74
150117--150168 23 2.3 23 96 3 97 25 21 7 46 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
152391--152424 17 2.0 17 100 0 68 29 11 5 52 1.61
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Tables: 1
The End!