NC_035551.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035551.1 Phellodendron amurense voucher PAMU20170211 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158442
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4763--4796 17 2.0 18 88 11 54 70 0 5 23 1.09
9474--9505 15 2.1 15 94 0 55 37 0 3 59 1.13
15037--15078 22 1.9 22 85 0 57 35 14 9 40 1.78
29985--30022 19 2.0 19 90 10 60 21 10 15 52 1.72
30305--30345 17 2.4 17 88 8 57 36 12 4 46 1.63
30314--30348 17 2.1 17 100 0 70 34 17 5 42 1.73
31357--31386 15 2.0 15 100 0 60 20 20 13 46 1.83
38789--38817 2 14.5 2 100 0 58 51 0 0 48 1.00
45070--45103 16 2.1 16 88 0 50 64 5 5 23 1.38
53173--53208 14 2.6 15 87 12 51 30 19 11 38 1.86
58560--58599 19 2.1 19 100 0 80 22 5 15 57 1.57
61256--61304 25 2.0 24 84 4 62 40 12 4 42 1.61
65856--65903 21 2.3 21 96 0 87 45 14 16 22 1.84
69080--69108 14 2.1 14 100 0 58 6 27 0 65 1.18
69879--69914 17 2.1 17 100 0 72 47 5 11 36 1.63
70433--70471 21 1.9 21 89 5 62 33 25 10 30 1.89
83065--83090 13 2.0 13 100 0 52 23 23 15 38 1.92
85159--85185 13 2.1 13 100 0 54 25 14 29 29 1.95
87312--87357 23 2.0 23 100 0 92 47 17 8 26 1.76
93908--93961 18 3.0 18 97 0 99 29 9 27 33 1.88
101698--101731 17 2.0 17 94 0 59 5 8 0 85 0.75
102231--102268 18 2.1 18 95 0 67 21 10 7 60 1.54
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110378--110439 32 1.9 32 96 0 115 38 24 9 27 1.86
113152--113200 24 2.0 24 100 0 98 55 4 16 24 1.59
113140--113175 17 2.1 17 100 0 72 50 5 22 22 1.70
116515--116562 23 2.1 23 100 0 96 50 8 4 37 1.52
134132--134193 32 1.9 32 96 0 115 27 9 24 38 1.86
142303--142340 18 2.1 18 95 0 67 60 7 10 21 1.54
142840--142873 17 2.0 17 94 0 59 85 0 8 5 0.75
150610--150663 18 3.0 18 97 0 99 33 27 9 29 1.88
157214--157259 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!