NC_035588.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035588.1 Lilium brownii chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152677
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1296--1322 13 2.1 13 100 0 54 70 7 0 22 1.12
13116--13141 13 2.0 13 100 0 52 30 23 0 46 1.53
28488--28538 13 3.9 13 85 10 68 50 0 1 47 1.12
30787--30823 13 2.8 13 91 4 56 40 8 2 48 1.47
30969--31002 13 2.6 13 95 0 59 52 11 0 35 1.38
30972--31013 11 3.6 11 90 6 57 54 7 2 35 1.41
40426--40467 21 2.0 21 100 0 84 52 14 0 33 1.42
46300--46325 13 2.0 13 100 0 52 46 15 0 38 1.46
52635--52665 16 2.0 15 93 6 53 54 6 6 32 1.51
54558--54590 15 2.1 16 94 5 59 18 0 9 72 1.10
77247--77295 24 2.0 24 88 0 71 26 32 14 26 1.94
78491--78547 28 2.0 28 83 6 71 50 0 0 49 1.00
87040--87087 21 2.3 21 96 0 87 12 33 8 45 1.72
89380--89436 24 2.4 24 96 0 105 31 8 24 35 1.86
97157--97182 13 2.0 13 100 0 52 23 0 0 76 0.78
97150--97210 31 1.9 31 83 6 77 18 4 3 73 1.14
108618--108653 16 2.2 16 100 0 72 72 0 0 27 0.85
111046--111096 22 2.3 23 79 3 59 33 3 3 58 1.35
123371--123400 15 2.0 15 93 0 51 43 10 0 46 1.37
125588--125612 12 2.1 12 100 0 50 32 16 8 44 1.76
137562--137622 31 1.9 31 83 6 77 73 3 4 18 1.14
137590--137615 13 2.0 13 100 0 52 76 0 0 23 0.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
145336--145392 24 2.4 24 96 0 105 35 24 8 31 1.86
147685--147732 21 2.2 22 92 7 89 45 8 33 12 1.72
147692--147746 21 2.5 21 88 8 74 43 10 29 16 1.82
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Tables: 1
The End!