NC_035719.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035719.1 Gentiana macrophylla chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 149916
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
424--469 12 3.7 12 77 11 56 13 13 0 73 1.09
419--485 26 2.6 26 95 4 118 14 8 1 74 1.13
469--613 71 2.0 71 96 2 265 30 4 9 55 1.51
592--625 17 2.0 17 94 0 59 47 0 8 44 1.34
636--661 13 2.0 13 100 0 52 46 7 0 46 1.31
7822--7846 12 2.1 12 100 0 50 52 0 24 24 1.48
14246--14273 14 2.0 14 100 0 56 35 14 7 42 1.73
26016--26040 12 2.1 12 100 0 50 32 0 32 36 1.58
30142--30189 24 2.0 24 91 0 78 47 2 14 35 1.56
30432--30492 30 2.0 30 100 0 122 24 29 22 22 1.99
30539--30622 30 3.1 30 64 25 85 47 4 9 38 1.57
30520--30622 52 2.0 50 96 3 188 46 3 10 38 1.57
31322--31434 56 2.0 55 98 1 217 36 15 8 39 1.78
34829--34973 73 2.0 73 100 0 290 30 19 22 28 1.98
35377--35403 12 2.2 12 100 0 54 44 0 0 55 0.99
35423--35451 13 2.2 13 100 0 58 55 0 6 37 1.27
46968--46997 15 2.0 15 100 0 60 20 13 6 60 1.55
55510--55689 97 1.9 97 100 0 360 32 6 14 46 1.71
55871--55898 14 2.0 14 100 0 56 21 7 0 71 1.09
57506--57535 15 1.9 16 93 6 53 40 6 0 53 1.27
57826--57850 8 3.1 8 100 0 50 24 0 24 52 1.48
60044--60086 14 2.9 14 89 6 59 41 18 9 30 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63304--63328 12 2.1 12 100 0 50 64 8 8 20 1.46
65645--65674 15 2.0 15 100 0 60 13 26 6 53 1.64
65967--66002 18 2.0 18 100 0 72 33 0 55 11 1.35
66178--66218 21 2.0 21 90 0 64 34 26 7 31 1.84
70585--70612 14 2.0 14 100 0 56 35 14 7 42 1.73
84038--84075 20 1.9 20 88 0 58 39 10 21 28 1.86
89048--89100 15 3.5 15 100 0 106 37 5 15 41 1.70
89092--89131 18 2.2 18 100 0 80 30 10 25 35 1.88
104502--104564 31 2.0 31 90 0 99 42 22 9 25 1.83
105010--105045 18 2.0 18 100 0 72 44 16 16 22 1.86
126806--126868 31 2.0 31 90 0 99 25 9 22 42 1.83
142239--142278 18 2.2 18 100 0 80 35 25 10 30 1.88
142270--142322 15 3.5 15 100 0 106 41 15 5 37 1.70
147295--147332 20 1.9 20 88 0 58 28 21 10 39 1.86
149488--149531 1 44.0 1 86 0 61 93 6 0 0 0.36
149488--149531 11 4.1 11 97 2 81 93 6 0 0 0.36
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Tables: 1
The End!