NC_035880.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035880.1 Prunus humilis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158012
Tables: 1
This is table 1 of 1 ( 49 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4974--4999 13 2.0 13 100 0 52 46 7 0 46 1.31
7086--7120 9 3.7 9 85 14 52 28 0 2 68 1.04
7086--7126 20 2.0 20 100 0 82 29 0 4 65 1.13
7111--7181 30 2.5 27 82 13 81 39 0 4 56 1.19
7088--7177 20 4.9 18 77 12 62 37 0 3 58 1.14
9620--9650 11 2.7 11 95 5 53 58 0 3 38 1.15
13229--13262 17 2.0 17 100 0 68 41 11 17 29 1.85
21193--21222 15 2.0 15 93 0 51 36 13 16 33 1.88
21198--21227 15 2.0 15 93 0 51 33 13 23 30 1.93
27762--27789 13 2.2 13 100 0 56 39 0 21 39 1.54
28904--28958 17 3.1 17 87 10 83 32 5 1 60 1.30
28911--28950 19 2.1 19 100 0 80 37 5 0 57 1.21
34020--34056 15 2.6 15 87 8 51 67 0 8 24 1.17
48265--48305 13 2.9 14 85 10 57 63 0 2 34 1.08
48871--48896 13 2.0 13 100 0 52 46 0 23 30 1.53
50294--50327 17 2.0 17 100 0 68 41 0 0 58 0.98
50297--50369 2 38.5 2 69 20 50 43 0 4 50 1.21
50297--50369 25 3.0 25 82 9 73 43 0 4 50 1.21
50312--50364 13 4.2 13 83 11 65 45 0 3 49 1.20
50295--50369 17 4.1 17 76 17 62 44 0 4 50 1.20
51477--51508 16 2.0 16 100 0 64 18 12 12 56 1.67
52977--53054 7 11.0 7 76 13 70 50 7 1 41 1.39
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
52978--53151 2 93.5 2 67 23 60 52 4 1 41 1.30
52981--53054 15 4.7 15 79 14 69 51 6 1 40 1.37
52986--53151 9 18.9 9 70 21 77 53 3 1 40 1.29
53073--53151 30 2.6 30 82 6 97 51 2 0 45 1.14
53141--53195 20 2.7 20 71 18 51 36 1 3 58 1.26
58476--58557 40 2.0 40 100 0 164 31 20 9 37 1.85
71794--71830 15 2.5 15 95 0 65 56 0 5 37 1.22
76401--76436 18 2.0 18 100 0 72 38 5 11 44 1.63
91082--91149 21 3.2 21 82 0 82 11 22 7 58 1.57
93501--93552 18 2.9 18 94 0 95 32 7 28 30 1.85
96527--96577 17 3.1 16 78 16 59 52 7 0 39 1.30
96532--96569 16 2.5 16 87 8 53 50 5 0 44 1.24
101070--101095 12 2.2 12 100 0 52 7 7 0 84 0.77
109792--109855 31 2.1 31 93 0 110 40 25 7 26 1.82
116204--116273 13 5.4 14 83 13 89 47 0 0 51 1.00
116207--116273 19 3.8 19 74 22 83 47 0 0 50 1.01
116204--116273 32 2.2 32 97 0 131 47 0 0 51 1.00
116486--116522 18 2.1 17 95 5 65 56 5 2 35 1.36
128497--128540 21 2.1 21 100 0 88 45 4 9 40 1.56
130227--130271 18 2.5 19 85 7 58 0 24 2 71 0.97
134219--134282 31 2.1 31 93 0 110 26 7 25 40 1.82
142979--143004 12 2.2 12 100 0 52 84 0 7 7 0.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147499--147549 17 3.1 18 75 16 56 41 0 7 50 1.31
147505--147549 16 2.8 16 83 6 56 44 0 6 48 1.29
147505--147559 15 3.6 16 78 9 62 47 0 5 47 1.25
150522--150573 18 2.9 18 94 0 95 30 28 7 32 1.85
152926--153014 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!