NC_035891.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035891.1 Prunus cerasoides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157685
Tables: 1
This is table 1 of 1 ( 41 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2--45 17 2.6 17 92 3 72 38 0 4 56 1.20
29--93 21 3.0 22 93 6 116 40 0 4 55 1.21
4895--4920 13 2.0 13 100 0 52 46 7 0 46 1.31
8934--8964 15 2.1 15 93 0 53 41 6 16 35 1.74
13050--13083 17 2.0 17 100 0 68 41 11 17 29 1.85
13727--13770 17 2.6 18 82 10 56 56 0 4 38 1.20
20982--21011 15 2.0 15 93 0 51 33 13 23 30 1.93
27553--27580 13 2.2 13 100 0 56 39 0 21 39 1.54
28700--28735 17 2.1 17 94 0 63 30 5 2 61 1.33
33808--33844 15 2.6 15 87 8 51 67 2 8 21 1.29
48092--48132 13 3.2 12 86 10 55 68 0 2 29 1.03
48710--48735 13 2.0 13 100 0 52 46 0 23 30 1.53
51117--51148 16 2.0 16 100 0 64 18 12 12 56 1.67
52446--52479 11 3.2 11 91 4 52 41 0 11 47 1.40
52627--52775 7 20.9 7 74 13 63 54 2 3 39 1.31
52626--52690 29 2.2 28 78 7 76 50 6 3 40 1.43
52722--52776 2 29.5 2 82 14 73 50 0 1 47 1.11
58069--58118 25 2.0 25 96 0 91 42 16 14 28 1.86
60296--60321 13 2.0 13 100 0 52 53 7 15 23 1.67
65239--65265 13 2.1 13 100 0 54 37 7 29 25 1.83
67197--67231 17 2.1 17 94 0 61 37 5 8 48 1.58
71433--71469 15 2.5 15 95 0 65 56 0 5 37 1.22
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
76052--76087 18 2.0 18 100 0 72 38 5 11 44 1.63
90770--90837 21 3.2 21 82 0 82 11 22 7 58 1.57
93189--93240 18 2.9 18 94 0 95 32 7 28 30 1.85
96215--96265 17 3.1 16 74 25 52 54 5 0 39 1.24
100766--100791 12 2.2 12 100 0 52 7 7 0 84 0.77
109490--109553 31 2.1 31 93 0 110 40 25 7 26 1.82
111739--111787 18 2.7 18 100 0 98 34 10 10 44 1.72
115633--115678 19 2.3 20 78 17 60 60 0 0 39 0.97
116188--116224 18 2.1 17 95 5 65 56 5 2 35 1.36
116502--116526 12 2.1 12 100 0 50 68 0 8 24 1.16
118180--118204 12 2.1 12 100 0 50 52 8 0 40 1.31
121704--121730 12 2.2 12 100 0 54 40 0 14 44 1.46
129917--129950 15 2.3 15 94 0 59 0 20 5 73 1.04
131691--131739 18 2.7 18 100 0 98 44 10 10 34 1.72
133925--133988 31 2.1 31 93 0 110 26 7 25 40 1.82
142687--142712 12 2.2 12 100 0 52 84 0 7 7 0.77
147220--147258 14 2.8 14 88 7 53 43 0 2 53 1.14
150238--150289 18 2.9 18 94 0 95 30 28 7 32 1.85
152642--152730 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!