NC_035895.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_035895.1 Alpinia oxyphylla chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161351
Tables: 1
This is table 1 of 1 ( 46 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4837--4869 16 2.1 16 100 0 66 51 12 0 36 1.39
6001--6033 16 2.1 16 94 5 59 45 6 0 48 1.27
6561--6600 9 4.6 9 90 6 64 47 0 0 52 1.00
6563--6597 17 2.1 17 94 0 61 48 0 0 51 1.00
6594--6622 14 2.1 14 100 0 58 37 0 13 48 1.43
6616--6655 20 2.0 20 95 0 71 37 5 17 40 1.72
8440--8464 13 1.9 13 100 0 50 72 12 0 16 1.13
9014--9038 11 2.3 11 100 0 50 44 0 8 48 1.32
14855--14893 14 2.6 14 92 8 60 53 12 0 33 1.39
14905--14950 14 3.2 14 87 3 65 56 0 0 43 0.99
14979--15004 12 2.2 12 100 0 52 69 0 0 30 0.89
30506--30551 23 2.0 23 100 0 92 8 17 13 60 1.56
31438--31469 16 2.0 16 100 0 64 43 12 12 31 1.80
32265--32295 15 2.1 15 100 0 62 19 6 12 61 1.53
32362--32417 29 1.9 29 92 0 94 46 12 19 21 1.83
34601--34635 17 2.0 18 94 5 63 51 0 8 40 1.33
48218--48251 17 2.0 17 100 0 68 35 5 0 58 1.22
48298--48328 15 2.1 15 93 0 53 16 6 6 70 1.29
48542--48572 13 2.5 13 94 5 55 48 29 0 22 1.51
62237--62274 19 2.0 19 100 0 76 31 0 0 68 0.90
62265--62291 12 2.2 12 100 0 54 40 0 0 59 0.98
62339--62375 15 2.4 15 90 4 56 35 2 0 62 1.10
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62367--62391 2 12.5 2 100 0 50 48 0 0 52 1.00
68131--68186 20 3.1 18 80 10 60 51 3 5 39 1.42
71071--71135 21 3.1 21 90 0 103 33 24 9 32 1.87
74757--74783 13 2.1 13 100 0 54 44 7 7 40 1.60
82627--82675 24 2.0 24 92 0 80 28 32 12 26 1.92
89957--90052 50 1.9 50 97 0 183 42 17 9 30 1.81
92611--92693 21 3.8 21 93 4 130 14 26 10 48 1.77
93931--93973 21 2.0 21 90 0 68 32 9 25 32 1.88
98179--98222 22 2.0 22 100 0 88 59 13 9 18 1.60
103676--103767 23 4.0 23 98 0 175 42 8 4 44 1.55
114905--114946 21 2.0 21 90 0 66 52 7 26 14 1.67
124511--124592 9 9.1 9 72 20 57 68 1 4 25 1.17
124517--124577 18 3.6 18 85 14 85 73 0 1 24 0.92
124584--124773 2 101.0 2 68 24 85 48 3 4 43 1.40
128457--128488 16 2.0 16 100 0 64 43 12 6 37 1.68
128994--129019 12 2.2 12 100 0 52 50 0 0 50 1.00
132313--132368 12 4.6 11 79 16 58 16 8 0 75 1.05
132322--132371 25 2.0 25 100 0 100 20 8 0 72 1.10
133654--133695 21 2.0 21 90 0 66 14 26 7 52 1.67
144833--144924 23 4.0 23 98 0 175 44 4 8 42 1.55
150378--150421 22 2.0 22 100 0 88 18 9 13 59 1.60
154627--154669 21 2.0 21 90 0 68 32 25 9 32 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
155907--155989 21 3.8 21 93 4 130 48 10 26 14 1.77
158548--158643 50 1.9 50 97 0 183 30 9 17 42 1.81
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Tables: 1
The End!