NC_036152.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036152.1 Aristolochia contorta chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160576
Tables: 1
This is table 1 of 1 ( 54 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4429--4566 17 8.1 17 66 23 67 59 0 0 40 0.97
4379--4471 28 3.4 28 77 16 97 58 0 1 40 1.05
4461--4576 41 2.9 41 83 9 127 61 0 0 38 0.96
4619--4672 23 2.3 24 90 6 92 61 11 7 20 1.53
7513--7545 14 2.4 14 95 5 59 48 15 6 30 1.69
14466--14508 13 3.4 13 84 15 63 62 0 0 37 0.95
14494--14529 18 2.0 19 89 10 58 80 0 0 19 0.71
14538--14578 21 2.0 21 85 9 57 31 2 0 65 1.05
17221--17254 17 2.0 17 100 0 68 58 0 11 29 1.33
32063--32098 18 2.0 18 100 0 72 22 33 22 22 1.97
38800--38846 2 24.0 2 87 12 71 51 2 0 46 1.13
39030--39062 16 2.1 16 94 0 57 12 48 0 39 1.40
49423--49501 26 2.9 27 76 14 90 36 3 1 58 1.24
49429--49466 20 1.9 19 94 5 67 42 5 0 52 1.24
49425--49609 51 3.6 50 75 17 152 44 1 1 51 1.20
49492--49615 2 67.0 2 73 17 99 50 0 2 47 1.14
49431--49615 54 3.5 50 75 18 146 45 1 2 50 1.23
49489--49579 15 6.1 15 74 16 75 51 0 0 48 1.00
50710--50745 18 2.0 18 100 0 72 61 22 0 16 1.35
51582--51615 11 3.2 11 83 8 52 11 8 0 79 0.94
53956--54008 24 2.2 24 93 3 90 49 7 0 43 1.31
53998--54051 17 3.0 18 74 20 51 50 0 0 50 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
53971--54054 2 44.5 2 69 19 56 50 2 0 47 1.14
55405--55438 17 2.0 17 88 0 50 58 11 11 17 1.62
63607--63656 19 2.5 20 93 6 84 42 6 0 52 1.26
63605--63661 19 2.9 19 87 12 73 42 7 0 50 1.29
68079--68104 13 2.0 13 100 0 52 76 0 7 15 0.99
71487--71517 15 2.1 15 93 0 53 48 16 6 29 1.70
72707--72763 20 2.9 19 72 12 53 66 0 0 33 0.92
72753--72850 8 11.6 8 73 20 58 52 0 0 47 1.00
72758--72849 22 4.1 22 77 14 82 51 0 0 48 1.00
72803--72851 2 26.5 2 80 15 61 53 0 0 46 1.00
72787--72851 15 4.3 17 76 21 65 50 0 0 49 1.00
72775--72851 21 3.6 21 77 10 84 50 0 0 49 1.00
73052--73095 21 2.1 21 91 0 70 29 27 13 29 1.94
73489--73572 15 5.7 15 74 14 59 51 0 0 48 1.00
73481--73568 28 3.1 28 71 3 77 48 0 0 51 1.00
74829--74862 17 2.0 17 100 0 68 11 35 5 47 1.65
76792--76832 18 2.5 17 85 14 59 36 0 0 63 0.95
76779--76822 6 7.2 6 79 5 52 36 2 0 61 1.09
87199--87230 13 2.6 12 90 9 55 43 9 12 34 1.75
88182--88207 13 2.0 13 100 0 52 23 15 0 61 1.33
94336--94424 42 2.1 42 85 8 117 13 25 10 50 1.73
94336--94425 21 4.1 22 83 9 105 13 25 10 51 1.72
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
96799--96865 24 3.6 18 74 25 59 32 5 23 37 1.79
96806--96858 24 2.2 24 100 0 106 33 7 24 33 1.84
104654--104703 18 2.7 18 87 9 66 28 8 0 64 1.22
119282--119311 15 2.0 15 93 0 51 40 10 26 23 1.86
132281--132316 18 2.0 18 94 0 63 22 5 2 69 1.22
145655--145704 18 2.7 18 87 9 66 64 0 8 28 1.22
153500--153552 24 2.2 24 100 0 106 33 24 7 33 1.84
153493--153556 18 3.2 19 73 26 53 35 25 6 32 1.81
155933--156022 21 4.1 21 80 9 92 51 10 25 13 1.72
155934--156022 42 2.1 43 85 8 119 50 10 25 13 1.73
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Tables: 1
The End!