NC_036153.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036153.1 Aristolochia debilis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159793
Tables: 1
This is table 1 of 1 ( 57 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1697--1726 15 2.0 15 100 0 60 20 26 13 40 1.89
3946--3997 19 2.7 20 81 6 61 51 0 0 48 1.00
3977--4017 15 2.8 15 85 3 57 39 2 0 58 1.11
4427--4471 17 2.7 17 89 3 65 55 0 0 44 0.99
4531--4585 23 2.3 24 84 6 85 63 9 7 20 1.47
5516--5551 18 2.0 18 100 0 72 27 0 16 55 1.42
8427--8455 14 2.1 14 100 0 58 34 0 13 51 1.42
29436--29473 17 2.1 18 85 14 51 7 7 0 84 0.79
29443--29473 14 2.2 14 100 0 62 6 6 0 87 0.68
34965--35008 22 2.0 22 100 0 88 40 4 18 36 1.71
38870--38907 17 2.3 17 95 4 69 34 21 18 26 1.96
38925--38972 2 24.0 2 87 8 71 47 2 2 47 1.25
39156--39188 16 2.1 16 94 0 57 12 48 0 39 1.40
47857--47905 18 2.7 18 93 0 80 44 4 4 46 1.41
49613--49638 10 2.6 10 100 0 52 19 0 0 80 0.71
49654--49728 3 25.3 3 72 17 59 60 0 0 40 0.97
49635--49730 9 8.9 11 77 20 80 59 0 0 40 0.97
52028--52075 23 2.1 23 100 0 96 25 20 8 45 1.79
52032--52084 23 2.3 23 90 6 81 26 18 9 45 1.80
54077--54106 15 1.9 16 93 6 53 56 3 0 40 1.16
54164--54317 5 31.2 5 72 20 96 55 0 2 41 1.13
54155--54320 20 8.1 20 78 19 148 54 0 3 42 1.15
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
54169--54315 14 10.7 14 67 26 75 55 0 2 41 1.14
54155--54319 11 15.9 11 71 24 103 55 0 3 41 1.15
54184--54317 9 13.7 9 66 20 56 55 0 2 41 1.15
54155--54320 44 4.0 43 78 16 154 54 0 3 42 1.15
54157--54370 79 2.6 78 79 12 184 54 0 3 41 1.22
54388--54429 18 2.5 16 85 14 66 59 0 7 33 1.25
54393--54427 18 1.9 18 100 0 70 57 0 8 34 1.29
55500--55533 17 2.0 17 88 0 50 58 11 11 17 1.62
63622--63696 25 3.0 25 76 18 77 41 8 0 50 1.32
71482--71512 15 2.1 15 93 0 53 48 16 6 29 1.70
71534--71583 25 2.0 25 100 0 100 20 20 0 60 1.37
72753--72871 40 3.0 38 75 15 107 47 2 0 49 1.21
72940--72978 20 2.0 20 94 0 69 64 12 0 23 1.28
73052--73095 21 2.1 21 86 0 61 29 25 13 31 1.94
73472--73515 13 3.6 13 75 25 51 59 0 0 40 0.98
76734--76774 21 2.0 21 85 9 57 31 2 2 63 1.20
88788--88815 9 3.1 9 100 0 56 21 21 14 42 1.88
94164--94252 42 2.1 42 85 8 117 13 25 10 50 1.73
94164--94253 21 4.1 22 83 9 105 13 25 10 51 1.72
96627--96693 24 3.6 18 74 25 59 32 5 23 37 1.79
96634--96686 24 2.2 24 100 0 106 33 7 24 33 1.84
99778--99816 10 3.9 11 78 21 50 48 12 0 38 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
104478--104507 12 2.4 13 94 5 53 26 6 0 66 1.16
105049--105088 20 2.0 20 100 0 80 25 15 20 40 1.90
118819--118858 20 2.0 20 100 0 80 40 15 30 15 1.87
122798--122825 14 2.0 14 100 0 56 28 14 0 57 1.38
123331--123355 12 2.1 12 100 0 50 16 8 0 76 1.02
131787--131822 18 2.0 18 94 0 63 22 5 2 69 1.22
144315--144354 20 2.0 20 100 0 80 40 20 15 25 1.90
144896--144925 12 2.4 13 94 5 53 66 0 6 26 1.16
149587--149625 10 3.9 11 78 21 50 38 0 12 48 1.42
152717--152769 24 2.2 24 100 0 106 33 24 7 33 1.84
152710--152773 18 3.2 19 73 26 53 35 25 6 32 1.81
155150--155239 21 4.1 21 80 9 92 51 10 25 13 1.72
155151--155239 42 2.1 43 85 8 119 50 10 25 13 1.73
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Tables: 1
The End!