NC_036236.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036236.1 Portulaca oleracea chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156533
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8279--8315 19 2.0 20 84 10 51 51 10 0 37 1.37
8422--8454 16 2.1 16 94 0 57 54 0 0 45 0.99
8452--8509 11 5.1 11 81 10 55 51 0 0 48 1.00
8444--8497 11 5.0 11 77 18 51 48 0 0 51 1.00
16301--16325 12 2.1 12 100 0 50 36 8 0 56 1.29
28423--28452 14 2.2 13 94 5 51 50 0 0 50 1.00
31493--31564 17 4.2 17 77 11 76 11 6 2 79 1.03
31497--31552 11 5.4 11 79 12 57 10 3 1 83 0.83
31577--31634 13 4.1 14 72 20 50 51 5 0 43 1.24
31586--31625 17 2.3 18 87 12 57 52 2 0 45 1.14
31608--31660 11 4.6 11 77 13 54 49 1 1 47 1.23
31713--31740 14 2.0 14 100 0 56 35 14 0 50 1.43
37364--37391 14 2.0 14 100 0 56 28 7 7 57 1.52
47401--47432 13 2.4 13 94 5 55 15 9 0 75 1.05
48056--48081 11 2.4 11 100 0 52 26 19 0 53 1.45
48599--48629 12 2.6 12 94 0 53 29 12 22 35 1.91
49004--49028 13 1.9 13 100 0 50 44 8 32 16 1.76
49129--49157 14 2.0 15 93 6 51 51 6 0 41 1.28
52661--52710 22 2.3 22 96 0 91 34 6 0 60 1.21
52826--52867 21 2.0 21 100 0 84 28 4 23 42 1.74
52824--52876 21 2.3 23 81 18 74 32 3 28 35 1.75
56787--56821 15 2.2 16 90 5 54 20 22 5 51 1.68
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62994--63061 2 34.0 2 79 5 57 50 0 1 48 1.10
66084--66166 26 3.0 27 87 8 107 19 7 6 67 1.36
66121--66163 13 3.3 13 75 12 52 20 4 4 69 1.25
70778--70814 12 2.8 14 80 16 51 64 0 5 29 1.15
84225--84261 18 2.1 18 100 0 74 43 10 10 35 1.75
84742--84770 14 2.0 15 93 6 51 62 0 6 31 1.22
84922--84972 19 2.6 20 87 9 70 27 13 5 52 1.63
85113--85140 13 2.2 13 100 0 56 28 14 0 57 1.38
91808--91896 21 4.1 21 78 5 81 12 22 10 55 1.67
94208--94278 18 3.9 18 92 0 115 28 14 23 33 1.94
94199--94278 36 2.2 36 88 0 115 28 12 23 35 1.91
101252--101290 18 2.2 18 95 0 69 25 5 7 61 1.44
109456--109521 32 2.1 32 94 0 114 40 22 9 27 1.84
115630--115665 15 2.5 15 95 4 65 52 8 19 19 1.70
116120--116158 11 3.5 11 80 13 53 41 0 0 58 0.98
122233--122288 27 2.1 27 100 0 112 21 17 14 46 1.84
134449--134514 32 2.1 32 94 0 114 27 9 22 40 1.84
142680--142718 18 2.2 18 95 0 69 61 7 5 25 1.44
149697--149771 18 4.2 18 92 0 114 36 24 10 29 1.89
152074--152162 21 4.1 21 78 5 81 55 10 22 12 1.67
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Tables: 1
The End!