NC_036356.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036356.1 Linum usitatissimum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156721
Tables: 1
This is table 1 of 1 ( 62 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3481--3510 15 2.0 15 100 0 60 40 6 6 46 1.56
30108--30200 47 2.0 45 87 4 132 37 16 1 45 1.54
31352--31387 18 2.0 18 100 0 72 38 5 27 27 1.79
46952--46977 12 2.2 12 100 0 52 30 15 7 46 1.74
52089--52134 21 2.2 21 92 0 74 34 6 15 43 1.72
52360--52515 54 3.1 54 77 17 188 37 8 21 32 1.83
52892--52956 33 2.0 33 84 6 87 24 13 29 32 1.94
52959--53020 21 3.0 22 83 9 85 29 4 24 41 1.75
53032--53071 15 2.7 15 88 7 55 27 7 32 32 1.85
53001--53097 48 2.0 49 89 2 151 25 11 28 34 1.91
61834--61918 35 2.4 35 96 0 152 57 2 7 32 1.38
62112--62172 21 2.9 21 95 0 95 34 18 11 36 1.86
62363--62488 27 4.8 27 96 3 231 63 11 0 25 1.27
64107--64145 18 2.2 18 85 0 51 35 12 7 43 1.72
64857--64933 24 3.2 24 90 0 109 0 50 18 31 1.47
64857--64933 36 2.1 36 87 0 109 0 50 18 31 1.47
64857--64924 12 5.7 12 94 0 109 0 54 17 27 1.43
64926--64988 6 10.5 6 71 19 51 4 36 17 41 1.71
64913--64988 18 4.2 18 96 0 134 3 36 18 40 1.69
76847--76877 9 3.4 9 90 0 53 25 22 0 51 1.48
81807--81853 23 2.0 23 100 0 94 53 4 8 34 1.51
83043--83078 18 2.0 18 100 0 72 22 27 22 27 1.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
84067--84168 12 9.0 12 85 12 126 40 15 8 35 1.79
84101--84139 9 4.0 9 81 18 51 51 12 10 25 1.71
84067--84145 21 3.6 21 94 5 131 44 16 8 30 1.78
84314--84354 21 2.0 21 100 0 82 26 19 14 39 1.90
86685--86768 42 2.0 42 83 0 105 25 5 30 38 1.80
86728--86765 12 3.2 12 100 0 76 31 0 34 34 1.58
88100--88168 27 2.6 28 86 9 83 40 5 31 21 1.77
95193--95218 13 2.0 13 100 0 52 46 15 0 38 1.46
103590--103614 12 2.1 12 100 0 50 8 24 32 36 1.84
105895--105984 18 5.0 18 93 4 121 41 3 44 11 1.56
106608--106644 12 3.1 12 96 0 65 35 0 13 51 1.41
106919--106955 18 2.1 18 94 0 65 67 5 2 24 1.25
107766--107820 9 6.1 9 91 0 92 45 3 29 21 1.69
108055--108131 6 12.8 6 70 14 52 71 0 16 11 1.14
108060--108111 19 2.8 19 80 11 54 73 0 15 11 1.11
108055--108131 24 3.2 24 100 0 154 71 0 16 11 1.14
108476--108566 24 3.8 24 94 4 150 63 12 7 16 1.50
111752--111781 15 2.0 15 100 0 60 66 13 0 20 1.24
111772--111809 20 1.9 20 88 0 58 55 7 13 23 1.64
114313--114393 18 4.5 18 84 0 99 35 18 12 33 1.88
114313--114387 36 2.1 36 100 0 150 36 17 13 33 1.88
125884--125974 24 3.8 24 94 4 150 16 7 12 63 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
126319--126395 6 12.8 6 68 15 52 11 16 0 71 1.14
126319--126395 24 3.2 24 100 0 154 11 16 0 71 1.14
126630--126684 9 6.1 9 91 0 92 21 29 3 45 1.69
127495--127531 18 2.1 18 94 0 65 24 2 5 67 1.25
127806--127842 12 3.1 12 96 0 65 51 13 0 35 1.41
128466--128555 18 5.0 18 91 5 130 11 44 3 41 1.56
130836--130860 12 2.1 12 100 0 50 36 32 24 8 1.84
139232--139257 13 2.0 13 100 0 52 38 0 15 46 1.46
146282--146341 27 2.3 26 91 5 95 20 33 6 40 1.78
147685--147722 12 3.2 12 100 0 76 34 34 0 31 1.58
147682--147765 42 2.0 42 83 0 105 38 30 5 25 1.80
150096--150136 21 2.0 21 100 0 82 39 14 19 26 1.90
150311--150349 9 4.0 9 81 18 51 25 10 12 51 1.71
150305--150383 21 3.6 21 94 5 131 30 8 16 44 1.78
150293--150383 33 2.7 34 81 14 118 32 8 16 41 1.79
150282--150383 12 9.0 12 85 12 126 35 8 15 40 1.79
151372--151407 18 2.0 18 100 0 72 27 22 27 22 1.99
152597--152643 23 2.0 23 100 0 94 34 8 4 53 1.51
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Tables: 1
The End!