NC_036367.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036367.1 Forsythia suspensa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156404
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
163--196 17 2.0 17 88 0 50 26 14 8 50 1.72
7050--7083 15 2.3 15 90 5 52 44 0 8 47 1.34
7985--8009 11 2.3 11 100 0 50 48 8 0 44 1.32
16579--16618 19 2.1 19 85 0 53 45 12 5 37 1.64
49293--49346 27 2.0 27 82 7 65 29 11 3 55 1.52
53339--53386 20 2.4 20 96 0 87 27 4 14 54 1.59
59306--59355 25 2.0 25 100 0 100 32 12 24 32 1.91
59505--59546 18 2.2 19 83 8 50 54 19 7 19 1.66
62636--62680 21 2.1 21 100 0 90 31 22 15 31 1.95
70624--70657 17 2.0 17 100 0 68 29 5 0 64 1.17
71163--71203 21 2.0 21 95 0 73 29 26 9 34 1.88
91906--91960 24 2.5 22 85 8 67 14 23 12 49 1.78
91928--91995 21 3.2 21 77 8 75 11 22 8 57 1.61
94309--94390 18 4.8 17 89 4 87 32 7 23 36 1.82
94323--94398 18 4.2 18 94 0 125 32 7 25 34 1.85
94323--94385 9 7.0 9 70 0 54 33 6 25 34 1.81
94309--94398 36 2.6 36 89 5 132 33 7 23 35 1.84
97310--97335 10 2.6 10 100 0 52 0 30 38 30 1.58
110168--110228 31 2.0 31 93 0 104 40 21 9 27 1.85
114476--114514 20 2.0 20 85 10 53 56 23 0 20 1.42
115351--115406 28 2.0 28 100 0 112 14 14 3 67 1.35
127127--127153 12 2.2 12 100 0 54 25 14 0 59 1.36
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129363--129418 27 2.0 28 86 10 80 0 23 5 71 1.06
129368--129416 14 3.5 14 77 8 55 0 22 4 73 1.00
133336--133396 31 2.0 31 93 0 104 27 9 21 40 1.85
141330--141375 23 2.0 23 86 0 65 60 6 6 26 1.46
146229--146254 10 2.6 10 100 0 52 30 38 30 0 1.58
149166--149241 18 4.2 18 94 0 125 34 25 7 32 1.85
149167--149233 9 7.4 9 68 0 53 31 26 8 32 1.87
149192--149255 18 3.8 16 80 13 67 37 21 6 34 1.79
151569--151658 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!