NC_036830.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_036830.1 Camellia japonica strain S288C chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156606
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4425--4471 25 2.0 25 83 8 62 68 6 4 21 1.30
6339--6372 16 2.1 16 94 0 59 38 0 8 52 1.33
6398--6448 22 2.3 23 80 10 61 68 5 3 21 1.27
10602--10629 10 2.8 10 100 0 56 17 10 0 71 1.14
46527--46563 19 1.9 19 100 0 74 43 5 10 40 1.63
48391--48421 16 1.9 16 100 0 62 58 6 3 32 1.40
49257--49281 12 2.1 12 100 0 50 44 8 48 0 1.32
52866--52896 16 1.9 16 93 0 53 25 6 6 61 1.45
60418--60457 16 2.5 16 87 0 53 35 10 5 50 1.58
91071--91125 24 2.5 22 85 8 67 14 23 12 49 1.78
91093--91160 21 3.2 21 77 8 75 11 22 8 57 1.61
93514--93599 18 4.9 17 92 4 77 30 11 26 31 1.92
93529--93602 18 4.1 18 96 0 130 29 10 27 32 1.90
100941--100992 23 2.2 24 86 6 72 23 1 0 75 0.91
101478--101514 18 2.1 18 89 0 56 18 13 8 59 1.58
113942--113983 20 2.0 21 86 13 61 54 21 0 23 1.44
122599--122627 14 2.1 14 100 0 58 72 0 0 27 0.85
123171--123196 12 2.2 12 100 0 52 34 15 15 34 1.89
129243--129298 15 3.9 14 75 15 51 1 23 3 71 1.11
130546--130579 16 2.1 17 88 5 52 26 11 2 58 1.47
141872--141923 23 2.3 23 86 6 70 75 0 1 23 0.91
149262--149335 18 4.1 18 96 0 130 32 27 10 29 1.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
149269--149350 18 4.8 17 92 4 78 32 26 10 29 1.91
151704--151793 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!